RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SLC22A18ASQ8N1D0 253 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 TMEM56-RWDD3S4R434 201 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 IGLC7A0M8Q6 106 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 TSKUQ8WUA8 353 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 COQ2Q96H96 371 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 CLEC7AQ9BXN2 247 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 NPIPB6E9PJ23 425 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 LEPP41159 167 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 BVES-AS1Q5T3Y7 98 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 FAM53AQ6NSI3 398 aaPredicted RBP11.22□□□□□ -0.61
USP40-208ENST00000450966 SHISA5Q8N114 240 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 KLK15Q9H2R5 256 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 PRDM6Q9NQX0 595 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 C9JCJ5 164 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 PFN1P07737 140 aaKnown RBP11.22□□□□□ -0.61
USP40-208ENST00000450966 GFRA1P56159 465 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 FGF12P61328 243 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 CDCP2Q5VXM1 449 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 MOB4Q9Y3A3 225 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 SMCHD1A6NHR9 2005 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 TTC3P53804 2025 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 NAPSAO96009 420 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 ZNF688P0C7X2 276 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 KIR2DL4Q99706 377 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PPV9 198 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 C10orf128Q5T292 105 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 Q6ZWC4 215 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 PGPEP1Q9NXJ5 209 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 LOC285556D6RIA3 1793 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PS18 150 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 CCL3P10147 92 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 CT83Q5H943 113 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 ZNF714Q96N38 554 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 CHAC1Q9BUX1 264 aa11.22□□□□□ -0.61
USP40-208ENST00000450966 ZNF815PA8K554 130 aa11.21□□□□□ -0.61
USP40-208ENST00000450966 MYO7AQ13402 2215 aa11.21□□□□□ -0.61
USP40-208ENST00000450966 CDPF1Q6NVV7 123 aa11.21□□□□□ -0.61
USP40-208ENST00000450966 FAM214BQ7L5A3 538 aa11.21□□□□□ -0.61
USP40-208ENST00000450966 DYNLRB2Q8TF09 96 aa11.21□□□□□ -0.61
USP40-208ENST00000450966 AMELYQ99218 206 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 SLC25A10Q9UBX3 287 aaPredicted RBP11.21□□□□□ -0.62
USP40-208ENST00000450966 ZNF236Q9UL36 1845 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 PRR19A6NJB7 356 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 C9JQL5 133 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 FOXS1O43638 330 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 REG1AP05451 166 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 ZNF721Q8TF20 911 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 KCNK17Q96T54 332 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 TMUB1Q9BVT8 246 aa11.21□□□□□ -0.62
USP40-208ENST00000450966 NUP205Q92621 2012 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 MCM3APO60318 1980 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 FAM90A2PQ658T7 463 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 ARPC1AQ92747 370 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 LGALS1P09382 135 aaKnown RBP11.2□□□□□ -0.62
USP40-208ENST00000450966 TFF3Q07654 80 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 ZNF658BQ4V348 819 aaPredicted RBP11.2□□□□□ -0.62
USP40-208ENST00000450966 DEFB125Q8N687 156 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 ZNF488Q96MN9 340 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 LTBRP36941 435 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 C19orf54Q5BKX5 351 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 GOLT1AQ6ZVE7 132 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 GPR82Q96P67 336 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 LINC01590Q5TEZ4 76 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 RPRMLQ8N4K4 120 aa11.2□□□□□ -0.62
USP40-208ENST00000450966 CX3CL1P78423 397 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 VKORC1Q9BQB6 163 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 IGHV3-13P01766 116 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 IGHV3-7P01780 117 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 PSG6Q00889 435 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 TM2D1Q9BX74 207 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 IL18BPO95998 194 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 MOSP00540 346 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 RNASE1P07998 156 aaKnown RBP11.19□□□□□ -0.62
USP40-208ENST00000450966 UNQ6494/PRO21346Q6UXR6 183 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 LILRA1O75019 489 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 TMEM78Q5T7P6 136 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 WFDC12Q8WWY7 111 aa11.19□□□□□ -0.62
USP40-208ENST00000450966 TCTEX1D4Q5JR98 221 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 CIARTQ8N365 385 aaPredicted RBP11.18□□□□□ -0.62
USP40-208ENST00000450966 PILRAQ9UKJ1 303 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 BRWD1Q9NSI6 2320 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 COA6Q5JTJ3 125 aaKnown RBP11.18□□□□□ -0.62
USP40-208ENST00000450966 TMEM105Q8N8V8 129 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 FBLN5Q9UBX5 448 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 IGLV1-36A0A0B4J1U3 117 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 G3V4G9 280 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 H3BMM0 161 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 ID1P41134 155 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 ID3Q02535 119 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 WFDC3Q8IUB2 231 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 UBE2WQ96B02 151 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 VGLL1Q99990 258 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 KIAA1217Q5T5P2 1943 aa11.18□□□□□ -0.62
USP40-208ENST00000450966 C1orf122Q6ZSJ8 110 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 C9orf40Q8IXQ3 194 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 SCN10AQ9Y5Y9 1956 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 DXOO77932 396 aaKnown RBP11.17□□□□□ -0.62
USP40-208ENST00000450966 COX8AP10176 69 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 MRAPQ8TCY5 172 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 PLNP26678 52 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms