RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CENPVQ7Z7K6 275 aaPredicted RBP16.89■□□□□ 0.3
PTPRF-207ENST00000436724 MMD2Q8IY49 270 aa16.89■□□□□ 0.3
PTPRF-207ENST00000436724 C1orf159Q96HA4 380 aa16.89■□□□□ 0.3
PTPRF-207ENST00000436724 UBE2CO00762 179 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 TAGLN2P37802 199 aaKnown RBP16.89■□□□□ 0.29
PTPRF-207ENST00000436724 DLK1P80370 383 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 HES1Q14469 280 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 MLANAQ16655 118 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 GNG13Q9P2W3 67 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 POLR3KQ9Y2Y1 108 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-207ENST00000436724 TIMM9Q9Y5J7 89 aa16.89■□□□□ 0.29
PTPRF-207ENST00000436724 DOPEY2Q9Y3R5 2298 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 ACTL6BO94805 426 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 UBE2E1P51965 193 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 ERHP84090 104 aaKnown RBP16.88■□□□□ 0.29
PTPRF-207ENST00000436724 C2orf83Q53S99 150 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 LCN15Q6UWW0 184 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 GGACTQ9BVM4 153 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 S100A6P06703 90 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 DEFA4P12838 97 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 SSBP2P81877 361 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-207ENST00000436724 PLGLAQ15195 96 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 OR10G4Q8NGN3 311 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 TVP23CQ96ET8 276 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 AJUBAQ96IF1 538 aa16.88■□□□□ 0.29
PTPRF-207ENST00000436724 EAF1Q96JC9 268 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-207ENST00000436724 A0A087WWC5 75 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 A0A1W2PN81 502 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 SAA4P35542 130 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 CHRNA7P36544 502 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 TMEM41BQ5BJD5 291 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 FFAR4Q5NUL3 377 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 MINOS1Q5TGZ0 78 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 RPP25LQ8N5L8 163 aaKnown RBP16.87■□□□□ 0.29
PTPRF-207ENST00000436724 ZNF709Q8N972 641 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 RCC1LQ96I51 464 aaKnown RBP16.87■□□□□ 0.29
PTPRF-207ENST00000436724 MINOS1-NBL1R4GNA1 71 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 MOSP00540 346 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 FGF8P55075 233 aaPredicted RBP16.87■□□□□ 0.29
PTPRF-207ENST00000436724 C19orf35Q6ZS72 473 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 MGST2Q99735 147 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 RNF5Q99942 180 aa16.87■□□□□ 0.29
PTPRF-207ENST00000436724 INS-IGF2F8WCM5 200 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 AREGP15514 252 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 RPL27AP46776 148 aaKnown RBP16.86■□□□□ 0.29
PTPRF-207ENST00000436724 COMPP49747 757 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-207ENST00000436724 PAX8Q06710 450 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 CLEC12BQ2HXU8 276 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 FAM90A2PQ658T7 463 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 PIP4P2Q8N4L2 257 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 NIPSNAP3BQ9BS92 247 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 NPVFQ9HCQ7 196 aa16.86■□□□□ 0.29
PTPRF-207ENST00000436724 IGHV3OR16-10A0A075B7F0 116 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 CENPVL3A0A0U1RRI6 287 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 IGLC7A0M8Q6 106 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 PLA2G2AP14555 144 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 PAX1P15863 534 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 CCDC144NLQ6NUI1 221 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 RBMS3Q6XE24 437 aaKnown RBP16.85■□□□□ 0.29
PTPRF-207ENST00000436724 SLC35E3Q7Z769 313 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 C1QL4Q86Z23 238 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 P2RX4Q99571 388 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 APCP25054 2843 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 ZFP92A6NM28 416 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 NBR2O15453 112 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 BCL2P10415 239 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 FABP9Q0Z7S8 132 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 GCSAMLQ5JQS6 135 aa16.85■□□□□ 0.29
PTPRF-207ENST00000436724 LSM4Q9Y4Z0 139 aaKnown RBP16.85■□□□□ 0.29
PTPRF-207ENST00000436724 C17orf112F2Z3M2 114 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 HMGB3O15347 200 aaKnown RBP16.84■□□□□ 0.29
PTPRF-207ENST00000436724 GGTLC1Q9BX51 225 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 HELZ2Q9BYK8 2649 aaKnown RBP16.84■□□□□ 0.29
PTPRF-207ENST00000436724 TBL2Q9Y4P3 447 aaKnown RBP16.84■□□□□ 0.29
PTPRF-207ENST00000436724 ABCA1O95477 2261 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 ELOBQ15370 118 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 ZNF343Q6P1L6 599 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 SSMEM1Q8WWF3 244 aa16.84■□□□□ 0.29
PTPRF-207ENST00000436724 NAV2Q8IVL1 2488 aa16.83■□□□□ 0.29
PTPRF-207ENST00000436724 OOSP1A8MZH6 123 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 IGHV3-48P01763 117 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 MIC13Q5XKP0 118 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 RUSC1-AS1Q66K80 236 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 TEPPQ6URK8 271 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 OR10G9Q8NGN4 311 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 OR10G7Q8NGN6 311 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 OR2T10Q8NGZ9 312 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 SRSF12Q8WXF0 261 aaKnown RBP16.83■□□□□ 0.28
PTPRF-207ENST00000436724 SLC25A22Q9H936 323 aa16.83■□□□□ 0.28
PTPRF-207ENST00000436724 MPDU1O75352 247 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 CXCL1P09341 107 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 GAMTQ14353 236 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 FAM120AOSQ5T036 256 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 Q8WTZ3 238 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 ZANQ9Y493 2812 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 IGKV1OR2-108A0A075B7D4 117 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 TEX22C9J3V5 150 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 NPFFO15130 113 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 NDUFA3O95167 84 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 ATP5IP56385 69 aaPredicted RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms