RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CFHR4Q92496 578 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 CTDSP1Q9GZU7 261 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 DCHS2Q6V1P9 2916 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 A0A1W2PRD5 423 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 A0A1W2PRF3 423 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 A0A1W2PRM7 423 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 TGOLN2O43493 480 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 NPY1RP25929 384 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 KRTAP10-9P60411 292 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 MEF2BQ02080 365 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 PLGLAQ15195 96 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 LINC00518Q8N0U6 118 aa14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 ZNF430Q9H8G1 570 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 METTL1Q9UBP6 276 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-203ENST00000389856 IGKV1D-33P01593 117 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 IGKV1-33P01594 117 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 FAM106CPP0CH98 169 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 OPRK1P41145 380 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 CEBPGP53567 150 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 SUB1P53999 127 aaKnown RBP eCLIP14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 FGF8P55075 233 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 PRSS8Q16651 343 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 FAM24BQ8N5W8 94 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 NDUFA4L2Q9NRX3 87 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 SIGLEC9Q9Y336 463 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 SPG11Q96JI7 2443 aa14.6□□□□□ -0.07
CCDC88C-203ENST00000389856 J3QLI3 93 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 NBR2O15453 112 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 S100A6P06703 90 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 HES1Q14469 280 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 Q5PR19 223 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 PPP1R27Q86WC6 154 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 ISOC2Q96AB3 205 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 TXNDC17Q9BRA2 123 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 SDF2L1Q9HCN8 221 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 C1RLQ9NZP8 487 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 ANKRD17O75179 2603 aaKnown RBP14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 PRSS46E5RG02 174 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 RRHO14718 337 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 CRYGBP07316 175 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 FBP1P09467 338 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 SAA4P35542 130 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 CDC34P49427 236 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 MMDQ15546 238 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 LDLRAD2Q5SZI1 272 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 NPBQ8NG41 125 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 RAB24Q969Q5 203 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 C7orf69Q9H7B7 122 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 NAT8Q9UHE5 227 aa14.59□□□□□ -0.07
CCDC88C-203ENST00000389856 IGHV1-69DA0A0B4J2H0 117 aa14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 CENPVL3A0A0U1RRI6 287 aa14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 IGHV1-69P01742 117 aa14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 CYP2G1PQ6ZSU1 146 aa14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 EAF1Q96JC9 268 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 SRSF8Q9BRL6 282 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-203ENST00000389856 TET2Q6N021 2002 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 WNK2Q9Y3S1 2297 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 ZNF727A8MUV8 499 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 RPL27AP46776 148 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 RND2P52198 227 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 RAB31Q13636 194 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 EBI3Q14213 229 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 C2orf83Q53S99 150 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 SLC25A22Q9H936 323 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 NPVFQ9HCQ7 196 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 HIF1ANQ9NWT6 349 aa14.57□□□□□ -0.08
CCDC88C-203ENST00000389856 C5orf52A6NGY3 159 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 CLDN34H7C241 214 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 OPN1MWP04001 364 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 OPN1MW2P0DN77 364 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 OPN1MW3P0DN78 364 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 COMPP49747 757 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 CD81P60033 236 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 TNXAQ16473 311 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 RITA1Q96K30 269 aa14.56□□□□□ -0.08
CCDC88C-203ENST00000389856 UBE2CO00762 179 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 NDUFA3O95167 84 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 CA2P00918 260 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 S100A8P05109 93 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 TMEM11P17152 192 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 TMEM241Q24JQ0 296 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 TREML4Q6UXN2 200 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 UTP20O75691 2785 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 A0A096LNT2 108 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 A0A1W2PPV4 95 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 BPIFB3P59826 476 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 ELOBQ15370 118 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 ZFP82Q8N141 532 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 C2CD4CQ8TF44 421 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 SMIM7Q9BQ49 75 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 TCEAL7Q9BRU2 100 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 FBXL15Q9H469 300 aa14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 LSM4Q9Y4Z0 139 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-203ENST00000389856 TRAV40A0A0B4J280 105 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 PDE6DO43924 150 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 CNIH1O95406 144 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 MYOD1P15172 320 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 CNTFRP26992 372 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 AKR1D1P51857 326 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 GNB1P62873 340 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms