RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PSG5Q15238 335 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 C2orf83Q53S99 150 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 AWAT1Q58HT5 328 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 FAM71F2Q6NXP2 309 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TMEM91Q6ZNR0 172 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 B9D2Q9BPU9 175 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 NRAPQ86VF7 1730 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 IGHV4-30-2A0A087WSY4 118 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 FOXI3A8MTJ6 420 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 PPP5D1E7EU14 171 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV1-8P0DP01 117 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 LOXP28300 417 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 SLC25A47Q6Q0C1 308 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 NEGR1Q7Z3B1 354 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 OR4D11Q8NGI4 311 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 RAB37Q96AX2 223 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 NAA50Q9GZZ1 169 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 PPIL3Q9H2H8 161 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV3OR16-13A0A075B7E8 117 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV3-74A0A0B4J1X5 117 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV3-35A0A0C4DH35 117 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 DNAJC9-AS1A6NH13 148 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 FAM90A26D6RGX4 464 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 RAMP1O60894 148 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 SMIM6P0DI80 62 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 RNASE4P34096 147 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 PPP1R1AQ13522 171 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 C15orf32Q32M92 178 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 CGB2Q6NT52 195 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 FAM156AQ8NDB6 213 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 ARFGEF3Q5TH69 2177 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 MYH10P35580 1976 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 JMJD1CQ15652 2540 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 NDUFB1O75438 58 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 TMEM128Q5BJH2 165 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 C1orf134Q5TEV5 83 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 DHRS11Q6UWP2 260 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 ANKRD60Q9BZ19 345 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV3-49A0A0A0MS15 119 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 EDN2P20800 178 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 HRH1P35367 487 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 SUCLG1P53597 346 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 ASB13Q8WXK3 278 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 PGLYRP4Q96LB8 373 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 MAP1LC3AQ9H492 121 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 AURKAIP1Q9NWT8 199 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 AK3Q9UIJ7 227 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 SCN9AQ15858 1988 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 A6NIN4 97 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 OVOL3O00110 214 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 GEMIN2O14893 280 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV2-5P01817 119 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 IGHV4-39P01824 125 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 RCC1P18754 421 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 EFNB2P52799 333 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 FABP9Q0Z7S8 132 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 ERCC8Q13216 396 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 PRNTQ86SH4 94 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 C17orf82Q86X59 251 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 APCDD1LQ8NCL9 501 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 RASL10AQ92737 203 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 ZNF48Q96MX3 618 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 GPX7Q96SL4 187 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 FAAP24Q9BTP7 215 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 TXNL4BQ9NX01 149 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 LINC00474Q9P2X8 69 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 XCL2Q9UBD3 114 aa3.36□□□□□ -1.87
USH2A-202ENST00000366942 ZNF706Q9Y5V0 76 aaPredicted RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 MYH9P35579 1960 aaKnown RBP3.36□□□□□ -1.87
USH2A-202ENST00000366942 CT62P0C5K7 136 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TCL1AP56279 114 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 LHFPL4Q7Z7J7 247 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 NAT8Q9UHE5 227 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TRAV8-7A0A075B6U6 113 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 DEFB131BA0A096LNP1 70 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 NDUFA7O95182 113 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TBX6O95947 436 aaPredicted RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 CXorf1O96002 111 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 PSG2P11465 335 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 HOXD13P35453 343 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TAL2Q16559 108 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TPRX1Q8N7U7 411 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 ATP6V0BQ99437 205 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 ZNF747Q9BV97 191 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 VCX2Q9H322 139 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 ZNF831Q5JPB2 1677 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 ABCA3Q99758 1704 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 IGHV4-61A0A0C4DH41 118 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 A8MWV9 139 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 GYPEP15421 78 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 FHITP49789 147 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 IFITM2Q01629 132 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 PLAC9Q5JTB6 97 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 OR1P1Q8NH06 330 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 UBE2WQ96B02 151 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 VWCEQ96DN2 955 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 HDHD3Q9BSH5 251 aaPredicted RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 SRXN1Q9BYN0 137 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 MRPL36Q9P0J6 103 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms