RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 DEFA4P12838 97 aa23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 DEFA5Q01523 94 aa23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 C2orf68Q2NKX9 166 aa23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 MYOZ3Q8TDC0 251 aa23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 TSSC4Q9Y5U2 329 aaPredicted RBP23.07■■□□□ 1.28
LIMCH1-211ENST00000509638 C13orf42A0A1B0GVH6 325 aa23.06■■□□□ 1.28
LIMCH1-211ENST00000509638 OR2C3Q8N628 320 aa23.06■■□□□ 1.28
LIMCH1-211ENST00000509638 A0A1W2PRX2 142 aa23.06■■□□□ 1.28
LIMCH1-211ENST00000509638 C5orf51A6NDU8 294 aa23.06■■□□□ 1.28
LIMCH1-211ENST00000509638 RBKSQ9H477 322 aa23.06■■□□□ 1.28
LIMCH1-211ENST00000509638 FAM90A26D6RGX4 464 aa23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 INS-IGF2F8WCM5 200 aa23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 GOSR2O14653 212 aa23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 BRI3O95415 125 aa23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 RPL23AP62750 156 aaKnown RBP23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 ZBTB8BQ8NAP8 495 aaPredicted RBP23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 OR4D5Q8NGN0 318 aa23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 F11RQ9Y624 299 aaKnown RBP23.05■■□□□ 1.28
LIMCH1-211ENST00000509638 VWFP04275 2813 aa23.04■■□□□ 1.28
LIMCH1-211ENST00000509638 ERHP84090 104 aaKnown RBP23.04■■□□□ 1.28
LIMCH1-211ENST00000509638 C11orf87Q6NUJ2 197 aa23.04■■□□□ 1.28
LIMCH1-211ENST00000509638 DNHD1Q96M86 4753 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 RHOGP84095 191 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 NSUN5P1Q3KNT7 163 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 NDUFA11Q86Y39 141 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 ZNF114Q8NC26 417 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 SPATA3Q8NHX4 192 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 DTD1Q8TEA8 209 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 FANCD2OSQ96PS1 177 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 P2RX4Q99571 388 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 HEYLQ9NQ87 328 aaPredicted RBP23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 GSKIPQ9P0R6 139 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 DMRT1Q9Y5R6 373 aa23.03■■□□□ 1.28
LIMCH1-211ENST00000509638 IGLV11-55A0A075B6I3 123 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 TRBV9A0A0B4J1U6 114 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 ADARB2-AS1A8MUL3 147 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 KIAA0141Q14154 515 aaPredicted RBP23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 GSG1LQ6UXU4 331 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 C18orf65Q6ZTR6 163 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 MAGT1Q9H0U3 335 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 ZFP57Q9NU63 452 aa23.02■■□□□ 1.28
LIMCH1-211ENST00000509638 OR2J3O76001 311 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 SCGB1D2O95969 90 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 SNCAP37840 140 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 MFAP2P55001 183 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 ZNF491Q8N8L2 437 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 KLHL30-AS1Q8NEE0 82 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 NKX2-1P43699 371 aaPredicted RBP23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 NECAP1Q8NC96 275 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 OR1P1Q8NH06 330 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 UBE2E2Q96LR5 201 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 GNB4Q9HAV0 340 aa23.01■■□□□ 1.27
LIMCH1-211ENST00000509638 FAM223BA6NKX1 122 aa23■■□□□ 1.27
LIMCH1-211ENST00000509638 NUDT19A8MXV4 375 aa23■■□□□ 1.27
LIMCH1-211ENST00000509638 CYB5BO43169 146 aa23■■□□□ 1.27
LIMCH1-211ENST00000509638 HIST1H1BP16401 226 aaKnown RBP23■■□□□ 1.27
LIMCH1-211ENST00000509638 FAM223AQ8IWN6 122 aa23■■□□□ 1.27
LIMCH1-211ENST00000509638 HIPK2Q9H2X6 1198 aa23■■□□□ 1.27
LIMCH1-211ENST00000509638 TRRAPQ9Y4A5 3859 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 MED6O75586 246 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 SIX6O95475 246 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 CDX1P47902 265 aaPredicted RBP22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 C2orf50Q96LR7 162 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 MGAT4CQ9UBM8 478 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 FBXL7Q9UJT9 491 aa22.99■■□□□ 1.27
LIMCH1-211ENST00000509638 SYNGR2O43760 224 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 IGHV3-11P01762 117 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 RNASE2P10153 161 aaKnown RBP22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 IAPPP10997 89 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 ID3Q02535 119 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 KLK9Q2XQG4 91 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 C15orf32Q32M92 178 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 SLC25A24Q6NUK1 477 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 SLC24A4Q8NFF2 622 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 OR5B12Q96R08 314 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 KLK9Q9UKQ9 250 aa22.98■■□□□ 1.27
LIMCH1-211ENST00000509638 A0A0G2JLM5 398 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 BSXQ3C1V8 233 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 OR1L6Q8NGR2 347 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 C4orf3Q8WVX3 66 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 USMG5Q96IX5 58 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 WRBO00258 174 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 SSSCA1O60232 199 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 HTR2BP41595 481 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 POLR2GP62487 172 aaKnown RBP eCLIP22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 C8orf86Q6ZUL3 223 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 THYN1Q9P016 225 aa22.97■■□□□ 1.27
LIMCH1-211ENST00000509638 NDUFB8O95169 186 aa22.96■■□□□ 1.27
LIMCH1-211ENST00000509638 H2BFSP57053 126 aa22.96■■□□□ 1.27
LIMCH1-211ENST00000509638 MISP3Q96FF7 219 aa22.96■■□□□ 1.27
LIMCH1-211ENST00000509638 MBPP02686 304 aaPredicted RBP22.95■■□□□ 1.26
LIMCH1-211ENST00000509638 SUB1P53999 127 aaKnown RBP eCLIP22.95■■□□□ 1.26
LIMCH1-211ENST00000509638 ATP5G2Q06055 141 aa22.95■■□□□ 1.26
LIMCH1-211ENST00000509638 MED28Q9H204 178 aa22.95■■□□□ 1.26
LIMCH1-211ENST00000509638 RCL1Q9Y2P8 373 aaKnown RBP22.95■■□□□ 1.26
LIMCH1-211ENST00000509638 LGALS1P09382 135 aaKnown RBP22.94■■□□□ 1.26
LIMCH1-211ENST00000509638 NPY1RP25929 384 aa22.94■■□□□ 1.26
LIMCH1-211ENST00000509638 EXOSC2Q13868 293 aaKnown RBP22.94■■□□□ 1.26
LIMCH1-211ENST00000509638 DEFB136Q30KP8 78 aa22.94■■□□□ 1.26
LIMCH1-211ENST00000509638 CIB3Q96Q77 187 aaPredicted RBP22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms