RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NRN1Q9NPD7 142 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 C3orf85A0A1B0GTC6 90 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 PSPNO60542 156 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 PRB4P10163 310 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 PSG2P11465 335 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 RPL23P62829 140 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 FAM166AQ6J272 317 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 LYPD2Q6UXB3 125 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 ACP7Q6ZNF0 438 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 Q6ZWC4 215 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 FAM234AQ9H0X4 552 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 GAL3ST2Q9H3Q3 398 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 MYOZ1Q9NP98 299 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 LOC102723971A0A1B0GUV8 181 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 TMEM210A6NLX4 147 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 FAM53AQ6NSI3 398 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 TBC1D26Q86UD7 250 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 C11orf53Q8IXP5 236 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 LEAP2Q969E1 77 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 UHRF2Q96PU4 802 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 HINT2Q9BX68 163 aa7.18□□□□□ -1.26
LIMCH1-209ENST00000509277 NAV3Q8IVL0 2385 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SAP30O75446 220 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CTSDP07339 412 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 MEF2BQ02080 365 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 PNRC1Q12796 327 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 AMMECR1LQ6DCA0 310 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 GAPTQ8N292 157 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CCDC71LQ8N9Z2 235 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CACNG5Q9UF02 275 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 TBL2Q9Y4P3 447 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 ZNF207O43670 478 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SCAND1P57086 179 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SRSF4Q08170 494 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 FXYD3Q14802 87 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 ZNF506Q5JVG8 444 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 VAX1Q5SQQ9 334 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SSX8Q7RTT4 187 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SPIN2AQ99865 258 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SPIN2BQ9BPZ2 258 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CCL28Q9NRJ3 127 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 PSENENQ9NZ42 101 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 MTORP42345 2549 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 A0A1W2PPV4 95 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CRYM-AS1A6NIL9 109 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 C11orf94C9JXX5 98 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 TUSC2O75896 110 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 IL6RP08887 468 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 FRMD6-AS1P0C7T7 363 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 GPR6P46095 362 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SMAGPQ0VAQ4 97 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 C1orf174Q8IYL3 243 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CD177Q8N6Q3 437 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 TIMD4Q96H15 378 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 SCRT1Q9BWW7 348 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 PKIBQ9C010 78 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 CSMD1Q96PZ7 3565 aa7.17□□□□□ -1.26
LIMCH1-209ENST00000509277 ABCA2Q9BZC7 2435 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 A0A087WWC5 75 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 DUXBA0A1W2PPF3 345 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 NKX6-3A6NJ46 265 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 TMEM238C9JI98 176 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 TMEM50AO95807 157 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 NUDT3O95989 172 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 QRFPP83859 136 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 RNASEKQ6P5S7 137 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 DNM1P46Q6ZS02 220 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 PLPPR1Q8TBJ4 325 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 PINX1Q96BK5 328 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 TRAV24A0A0B4J272 114 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 OOEPA6NGQ2 149 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 OR2T8A6NH00 312 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 KRASP01116 189 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 MDH2P40926 338 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 COMPP49747 757 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 CAMPP49913 170 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 UBE2V1Q13404 147 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 Q8IYB0 196 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 TMEM170AQ8WVE7 144 aa7.16□□□□□ -1.26
LIMCH1-209ENST00000509277 IGKV1D-17A0A075B6S4 117 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 TRAV38-1A0A0B4J264 116 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 HSBP1O75506 76 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 SCTP09683 121 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 SSTR5P35346 364 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 TMEM187Q14656 261 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 NHLRC2Q8NBF2 726 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 ACY3Q96HD9 319 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 GNG12Q9UBI6 72 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 LSM4Q9Y4Z0 139 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 SETD2Q9BYW2 2564 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 TRBV24-1A0A075B6N3 115 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 TAS2R30P59541 319 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 PMCHL1Q16048 86 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 C3orf36Q3SXR2 165 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 TM4SF20Q53R12 229 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 BPESC1Q9GZL8 116 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 MRPL18Q9H0U6 180 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 SLC35D1Q9NTN3 355 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 KCNIP1Q9NZI2 227 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 UQCR10Q9UDW1 63 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms