RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SLURP1P55000 103 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 MFAP4P55083 255 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 SPCS3P61009 180 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 UBE2MP61081 183 aaKnown RBP4.89□□□□□ -1.63
USP54-202ENST00000413442 PRCDQ00LT1 54 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 ZNF45Q02386 682 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 RELQ04864 619 aaPredicted RBP4.89□□□□□ -1.63
USP54-202ENST00000413442 CD69Q07108 199 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 EXOSC2Q13868 293 aaKnown RBP4.89□□□□□ -1.63
USP54-202ENST00000413442 SCGB2B2Q4G0G5 96 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 PHLDA2Q53GA4 152 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 HIST2H2BDQ6DRA6 164 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 SLC25A24Q6NUK1 477 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 PLET1Q6UQ28 207 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 GTSCR1Q86UQ5 136 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 TOMM5Q8N4H5 51 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 OR2C3Q8N628 320 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 RBPMSQ93062 196 aaKnown RBP4.89□□□□□ -1.63
USP54-202ENST00000413442 ENY2Q9NPA8 101 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 DMRT1Q9Y5R6 373 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 TMEM56-RWDD3S4R434 201 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 CMYA5Q8N3K9 4069 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 NOTCH3Q9UM47 2321 aa4.89□□□□□ -1.63
USP54-202ENST00000413442 A0A0B4J2A0 478 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 WI2-2373I1.2A0A1W2PRP0 233 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CRYM-AS1A6NIL9 109 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CGB1A6NKQ9 187 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 C15orf62A8K5M9 175 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CENPXA8MT69 81 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 NDUFA4O00483 81 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 NUPL2O15504 423 aaKnown RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 RBMXL2O75526 392 aaKnown RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 NDUFB8O95169 186 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 HLA-AP01891 365 aaKnown RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 CSN3P07498 182 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 P0C879 139 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 C8orf88P0DMB2 117 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 SLC25A6P12236 298 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 AREGP15514 252 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CBLN1P23435 193 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 HTR2BP41595 481 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 NPBWR1P48145 328 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 AKR1C2P52895 323 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 SYNJ2BPP57105 145 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 WT1-ASQ06250 92 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 TRIM16LQ309B1 348 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 TMEM128Q5BJH2 165 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 PVRIGQ6DKI7 326 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 LAMTOR1Q6IAA8 161 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 ETFRF1Q6IPR1 90 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CLEC19AQ6UXS0 136 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 IL34Q6ZMJ4 242 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 CCDC190Q86UF4 302 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 DUSP18Q8NEJ0 188 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 OR13C8Q8NGS7 320 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 ZNF502Q8TBZ5 544 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 MARCH1Q8TCQ1 289 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 GLYATL2Q8WU03 294 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 GPHA2Q96T91 129 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 FAM110AQ9BQ89 295 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 C7orf50Q9BRJ6 194 aaKnown RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 RTBDNQ9BSG5 229 aaPredicted RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 ZNF436Q9C0F3 470 aaPredicted RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 ALX4Q9H161 411 aaPredicted RBP4.88□□□□□ -1.63
USP54-202ENST00000413442 HIPK2Q9H2X6 1198 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 NAA60Q9H7X0 242 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 PLEKHA3Q9HB20 300 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 ZC4H2Q9NQZ6 224 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 C21orf62Q9NYP8 219 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 SHPKQ9UHJ6 478 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 NOTCH1P46531 2555 aa4.88□□□□□ -1.63
USP54-202ENST00000413442 TRAV3A0A0B4J244 114 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 A0A1B0GU03 582 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 A0A1B0GW64 132 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 RPS10-NUDT3A0A1W2PQS6 291 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 BMPR1BO00238 502 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 TGOLN2O43493 480 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 OR2C1O95371 312 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 IFNA17P01571 189 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 IGKV1-39P01597 117 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 IGKV1D-39P04432 117 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 SLC25A4P12235 298 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 FOLR2P14207 255 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 SPNP16150 400 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 INPP1P49441 399 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 CCR6P51684 374 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 DEFB114Q30KQ6 69 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 PYDC2Q56P42 97 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 C10orf55Q5SWW7 151 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 LGI3Q8N145 548 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 SLC35G3Q8N808 338 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 LRTM2Q8N967 370 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 OR51S1Q8NGJ8 323 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 OR4C16Q8NGL9 310 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 RNASE11Q8TAA1 199 aaKnown RBP4.87□□□□□ -1.63
USP54-202ENST00000413442 RNASEH2CQ8TDP1 164 aaKnown RBP4.87□□□□□ -1.63
USP54-202ENST00000413442 SCARB1Q8WTV0 552 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 CASTOR1Q8WTX7 329 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 MRGPRFQ96AM1 343 aa4.87□□□□□ -1.63
USP54-202ENST00000413442 RBMXL1Q96E39 390 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms