RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CR1LQ2VPA4 569 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 FAM216BQ8N7L0 139 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 LRFN3Q9BTN0 628 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 SNURFLB1AK76 121 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 CGB3P0DN86 165 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 CGB7P0DN87 165 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 MRPS11P82912 194 aaKnown RBP16.89■□□□□ 0.29
CLK3-202ENST00000395066 Q0VG73 95 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 RPEL1Q2QD12 228 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 CCL13Q99616 98 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 ATMQ13315 3056 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 KALRNO60229 2985 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 C9JCJ5 164 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 BRS3P32247 399 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 GAGE1Q13065 139 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 C11orf52Q96A22 123 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 TMEM14BQ9NUH8 114 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 OTOGLQ3ZCN5 2332 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 SPINK4O60575 86 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 LHBP01229 141 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 HSPE1P61604 102 aaKnown RBP16.88■□□□□ 0.29
CLK3-202ENST00000395066 MZT1Q08AG7 82 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 ASPHD1Q5U4P2 390 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 MMD2Q8IY49 270 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 RND1Q92730 232 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 EAF1Q96JC9 268 aaPredicted RBP16.88■□□□□ 0.29
CLK3-202ENST00000395066 ENY2Q9NPA8 101 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 ASCL3Q9NQ33 180 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 TANC2Q9HCD6 1990 aa16.88■□□□□ 0.29
CLK3-202ENST00000395066 TRGV8A0A0C4DH27 118 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 SRRM4A7MD48 611 aaKnown RBP16.87■□□□□ 0.29
CLK3-202ENST00000395066 NPSP0C0P6 89 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 COMPP49747 757 aaPredicted RBP16.87■□□□□ 0.29
CLK3-202ENST00000395066 RHOBP62745 196 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 IGFL2Q6UWQ7 119 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 UHRF2Q96PU4 802 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 TUBG2Q9NRH3 451 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 PPP1R14DQ9NXH3 145 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 OR51B2Q9Y5P1 312 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 LY96Q9Y6Y9 160 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 IGKV1OR2-108A0A075B7D4 117 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 TRGV10A0A0A0MS01 117 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 KBTBD11-OT1A0A1B0GTJ5 212 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 MT-CO2P00403 227 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 RBM14Q96PK6 669 aaKnown RBP16.87■□□□□ 0.29
CLK3-202ENST00000395066 LPAR2Q9HBW0 351 aa16.87■□□□□ 0.29
CLK3-202ENST00000395066 FTH1P19P0C7X4 201 aa16.86■□□□□ 0.29
CLK3-202ENST00000395066 PSG5Q15238 335 aa16.86■□□□□ 0.29
CLK3-202ENST00000395066 BATFQ16520 125 aa16.86■□□□□ 0.29
CLK3-202ENST00000395066 GCM1Q9NP62 436 aa16.86■□□□□ 0.29
CLK3-202ENST00000395066 FOXA2Q9Y261 457 aaPredicted RBP16.86■□□□□ 0.29
CLK3-202ENST00000395066 V9GYV3 84 aa16.86■□□□□ 0.29
CLK3-202ENST00000395066 TRBV9A0A0B4J1U6 114 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 OR10J4P0C629 311 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 LINC00869P0C866 280 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 OR8I2Q8N0Y5 310 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 SIGLECL1Q8N7X8 197 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 GNB1LQ9BYB4 327 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 CFHR2P36980 270 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 FBXL7Q9UJT9 491 aa16.85■□□□□ 0.29
CLK3-202ENST00000395066 J3QR06 171 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 CRYBB3P26998 211 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 KIR2DS2P43631 304 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 RAB7AP51149 207 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 SLC35B1P78383 322 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 OR10W1Q8NGF6 305 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 FAM103A1Q9BTL3 118 aaKnown RBP16.84■□□□□ 0.29
CLK3-202ENST00000395066 GNB4Q9HAV0 340 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 GVINP1Q7Z2Y8 2422 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 CRYABP02511 175 aaKnown RBP16.84■□□□□ 0.29
CLK3-202ENST00000395066 PRR20EP86478 221 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 PRR20CP86479 221 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 PRR20DP86480 221 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 PRR20BP86481 221 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 PRR20AP86496 221 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 DOLPP1Q86YN1 238 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 ZCCHC24Q8N2G6 241 aaKnown RBP16.84■□□□□ 0.29
CLK3-202ENST00000395066 ST6GALNAC3Q8NDV1 305 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 RNF114Q9Y508 228 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 FAM215AQ9Y5M1 114 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 AKAP13Q12802 2813 aa16.84■□□□□ 0.29
CLK3-202ENST00000395066 GPX1P07203 203 aa16.83■□□□□ 0.29
CLK3-202ENST00000395066 GLRXP35754 106 aa16.83■□□□□ 0.29
CLK3-202ENST00000395066 KRTDAPP60985 99 aa16.83■□□□□ 0.29
CLK3-202ENST00000395066 GAFA1Q96PS6 74 aa16.83■□□□□ 0.29
CLK3-202ENST00000395066 TNFAIP6P98066 277 aaPredicted RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 FXYD3Q14802 87 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 ZNF439Q8NDP4 499 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 NABP2Q9BQ15 211 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 SFXN3Q9BWM7 321 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 ZNF586Q9NXT0 402 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 MBD3L4A6NDZ8 208 aaPredicted RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 MBD3L3A6NE82 208 aaPredicted RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 MBD3L5A6NJ08 208 aaPredicted RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 CT45A6P0DMU7 189 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 CT45A5P0DMU8 189 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 CT45A7P0DMV0 189 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 AREGP15514 252 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 FAM27E3Q08E93 113 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 OR4B1Q8NGF8 309 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms