RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 STAG3L2P0CL84 134 aa11.39□□□□□ -0.59
USF1-202ENST00000368020 STAG3L3P0CL85 134 aa11.39□□□□□ -0.59
USF1-202ENST00000368020 SUB1P53999 127 aaKnown RBP eCLIP11.39□□□□□ -0.59
USF1-202ENST00000368020 ELOBQ15370 118 aa11.39□□□□□ -0.59
USF1-202ENST00000368020 RAB1BQ9H0U4 201 aa11.39□□□□□ -0.59
USF1-202ENST00000368020 NDUFA4L2Q9NRX3 87 aa11.39□□□□□ -0.59
USF1-202ENST00000368020 SRRM4A7MD48 611 aaKnown RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 PAGE4O60829 102 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 YIF1AO95070 293 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 GOSR1O95249 250 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 GPX4P36969 197 aaPredicted RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 HLA-DRB5Q30154 266 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 STPG3Q8N7X2 389 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 PARLQ9H300 379 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 MIOXQ9UGB7 285 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 AMMECR1Q9Y4X0 333 aaPredicted RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 HMGB3O15347 200 aaKnown RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 CLN5O75503 358 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 IGHV2-70P01814 119 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 RNF224P0DH78 156 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 MIC13Q5XKP0 118 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 SPNS3Q6ZMD2 512 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 ZFP82Q8N141 532 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 PNKDQ8N490 385 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 C8orf46Q8TAG6 207 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 RNASEH2CQ8TDP1 164 aaKnown RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 C2CD4CQ8TF44 421 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 ANAPC16Q96DE5 110 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 TIMD4Q96H15 378 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 TCEAL7Q9BRU2 100 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 TMPRSS5Q9H3S3 457 aa11.38□□□□□ -0.59
USF1-202ENST00000368020 METTL1Q9UBP6 276 aaKnown RBP11.38□□□□□ -0.59
USF1-202ENST00000368020 USP9YO00507 2555 aaPredicted RBP11.37□□□□□ -0.59
USF1-202ENST00000368020 C19orf84I3L1E1 186 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 S100A8P05109 93 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 PRR20EP86478 221 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 PRR20CP86479 221 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 PRR20DP86480 221 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 PRR20BP86481 221 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 PRR20AP86496 221 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 BEND2Q8NDZ0 799 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 OR8B3Q8NGG8 313 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 Q8WTZ3 238 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 RPUSD4Q96CM3 377 aaKnown RBP11.37□□□□□ -0.59
USF1-202ENST00000368020 OR8B2Q96RD0 313 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 SPOCK3Q9BQ16 436 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 DOK5Q9P104 306 aa11.37□□□□□ -0.59
USF1-202ENST00000368020 COL12A1Q99715 3063 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 TRBV24-1A0A075B6N3 115 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 C5orf52A6NGY3 159 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 UBE2CO00762 179 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 PLAUP00749 431 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 ARL14EPLP0DKL9 152 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 RNASE2P10153 161 aaKnown RBP11.36□□□□□ -0.59
USF1-202ENST00000368020 S100PP25815 95 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 RPS10P46783 165 aaKnown RBP11.36□□□□□ -0.59
USF1-202ENST00000368020 ADIRFQ15847 76 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 SSX2Q16385 188 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 ZNF674Q2M3X9 581 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 TEX45Q8NA69 505 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 NEU4Q8WWR8 484 aaPredicted RBP11.36□□□□□ -0.59
USF1-202ENST00000368020 BTF3L4Q96K17 158 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 RNF2Q99496 336 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 CHODLQ9H9P2 273 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 PATZ1Q9HBE1 687 aaKnown RBP11.36□□□□□ -0.59
USF1-202ENST00000368020 CBLN4Q9NTU7 201 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 ZNRD1Q9P1U0 126 aa11.36□□□□□ -0.59
USF1-202ENST00000368020 SIAH2O43255 324 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 CD99P14209 185 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 TAS2R45P59539 299 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 CD69Q07108 199 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 LINC00518Q8N0U6 118 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 OR5B12Q96R08 314 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 CLEC7AQ9BXN2 247 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 SLC45A2Q9UMX9 530 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 FASNP49327 2511 aaKnown RBP11.35□□□□□ -0.59
USF1-202ENST00000368020 IGHV2-26A0A0B4J1V2 119 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 AKR1D1P51857 326 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 ERVFRD-1P60508 538 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 CST9LP1Q5W188 147 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 SSMEM1Q8WWF3 244 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 C1orf159Q96HA4 380 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 RNF5Q99942 180 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 TMEM167BQ9NRX6 74 aa11.35□□□□□ -0.59
USF1-202ENST00000368020 TNCP24821 2201 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 AP4M1O00189 453 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 PPP1R2P9O14990 202 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 IGLV1-47P01700 117 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 IGLV2-23P01705 113 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 GCHFRP30047 84 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 REG1BP48304 166 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 RPL23P62829 140 aaKnown RBP11.34□□□□□ -0.59
USF1-202ENST00000368020 GCSAMLQ5JQS6 135 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 ETFRF1Q6IPR1 90 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 ZNF841Q6ZN19 808 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 PQLC2Q6ZP29 291 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 MMD2Q8IY49 270 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 C11orf42Q8N5U0 333 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 ABHD5Q8WTS1 349 aa11.34□□□□□ -0.59
USF1-202ENST00000368020 FAM210BQ96KR6 192 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms