RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CX3CL1P78423 397 aa14.76□□□□□ -0.05
CLN3-206ENST00000360019 FXYD3Q14802 87 aa14.76□□□□□ -0.05
CLN3-206ENST00000360019 LY6EQ16553 131 aa14.76□□□□□ -0.05
CLN3-206ENST00000360019 ZNF562Q6V9R5 426 aa14.76□□□□□ -0.05
CLN3-206ENST00000360019 ETV3LQ6ZN32 361 aa14.76□□□□□ -0.05
CLN3-206ENST00000360019 BAHCC1Q9P281 2608 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 HLA-DRB1P01911 266 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 REG1AP05451 166 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 SNCAP37840 140 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 RAB11AP62491 216 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 ZNF266Q14584 549 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 TUSC1Q2TAM9 212 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 C2orf83Q53S99 150 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 IL17RELQ6ZVW7 336 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 ZNF767PQ75MW2 155 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 LILRB2Q8N423 598 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 C5orf56Q8N8D9 126 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 SSMEM1Q8WWF3 244 aa14.75□□□□□ -0.05
CLN3-206ENST00000360019 FAM103A1Q9BTL3 118 aaKnown RBP14.75□□□□□ -0.05
CLN3-206ENST00000360019 BORCS7-ASMTA0A0B4J1R7 106 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 IGHV7-81A0A0B4J1V7 117 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 IFNA4P05014 189 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 PINX1Q96BK5 328 aaKnown RBP14.74□□□□□ -0.05
CLN3-206ENST00000360019 ZNF48Q96MX3 618 aaPredicted RBP14.74□□□□□ -0.05
CLN3-206ENST00000360019 P2RX4Q99571 388 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 RASL11BQ9BPW5 248 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 HSPB9Q9BQS6 159 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 ARV1Q9H2C2 271 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 MOB4Q9Y3A3 225 aa14.74□□□□□ -0.05
CLN3-206ENST00000360019 DFFBO76075 338 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 IFNA7P01567 189 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 AMY1AP04745 511 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 C19orf35Q6ZS72 473 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 ARPC1AQ92747 370 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 FBXO7Q9Y3I1 522 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 SH2D7A6NKC9 451 aaPredicted RBP14.73□□□□□ -0.05
CLN3-206ENST00000360019 IGHV4-59P01825 116 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 ATP5IP56385 69 aaPredicted RBP14.73□□□□□ -0.05
CLN3-206ENST00000360019 EIF5AP63241 154 aaKnown RBP14.73□□□□□ -0.05
CLN3-206ENST00000360019 PHYHIPLQ96FC7 376 aa14.73□□□□□ -0.05
CLN3-206ENST00000360019 SRSF8Q9BRL6 282 aaKnown RBP14.73□□□□□ -0.05
CLN3-206ENST00000360019 FGF16O43320 207 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 SCAF4O95104 1147 aaKnown RBP14.72□□□□□ -0.05
CLN3-206ENST00000360019 IER3P46695 156 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 ATP6V1FQ16864 119 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 HSD17B13Q7Z5P4 300 aaPredicted RBP14.72□□□□□ -0.05
CLN3-206ENST00000360019 MRPL41Q8IXM3 137 aaKnown RBP14.72□□□□□ -0.05
CLN3-206ENST00000360019 HSD17B11Q8NBQ5 300 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 ZNF114Q8NC26 417 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 GINS3Q9BRX5 216 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 UBQLN2Q9UHD9 624 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 CUBNO60494 3623 aa14.72□□□□□ -0.05
CLN3-206ENST00000360019 EGR2P11161 476 aaPredicted RBP14.71□□□□□ -0.05
CLN3-206ENST00000360019 VWC2Q2TAL6 325 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 SPNS3Q6ZMD2 512 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 ABHD5Q8WTS1 349 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 SCARB1Q8WTV0 552 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 TMED6Q8WW62 240 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 TMEM147Q9BVK8 224 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 UQCC1Q9NVA1 299 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 PITPNC1Q9UKF7 332 aa14.71□□□□□ -0.05
CLN3-206ENST00000360019 UBE2L5PA0A1B0GUS4 154 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 FBXO24O75426 580 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 MFAP2P55001 183 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 FAM74A1Q5RGS3 127 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 ASPHD1Q5U4P2 390 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 TEX29Q8N6K0 151 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 SH3BGRL3Q9H299 93 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 PRDM13Q9H4Q3 707 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 YAE1D1Q9NRH1 226 aa14.71□□□□□ -0.06
CLN3-206ENST00000360019 RUNX1Q01196 453 aa14.7□□□□□ -0.06
CLN3-206ENST00000360019 PVRIGQ6DKI7 326 aa14.7□□□□□ -0.06
CLN3-206ENST00000360019 Q6YL49 198 aa14.7□□□□□ -0.06
CLN3-206ENST00000360019 SMR3AQ99954 134 aa14.7□□□□□ -0.06
CLN3-206ENST00000360019 RFNGQ9Y644 331 aa14.7□□□□□ -0.06
CLN3-206ENST00000360019 IFNA5P01569 189 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 CTRB1P17538 263 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 ATP6V0CP27449 155 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 SUB1P53999 127 aaKnown RBP eCLIP14.69□□□□□ -0.06
CLN3-206ENST00000360019 DLK1P80370 383 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 ARSJQ5FYB0 599 aaPredicted RBP14.69□□□□□ -0.06
CLN3-206ENST00000360019 CTRB2Q6GPI1 263 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 GGACTQ9BVM4 153 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 WDR61Q9GZS3 305 aaKnown RBP14.69□□□□□ -0.06
CLN3-206ENST00000360019 DMRT1Q9Y5R6 373 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 F11RQ9Y624 299 aaKnown RBP14.69□□□□□ -0.06
CLN3-206ENST00000360019 LINC01548A6NM66 108 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 SPP1P10451 314 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 SLC25A24Q6NUK1 477 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 OR1P1Q8NH06 330 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 PCNPQ8WW12 178 aaKnown RBP14.69□□□□□ -0.06
CLN3-206ENST00000360019 SLC25A32Q9H2D1 315 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 PLA2G2EQ9NZK7 142 aa14.69□□□□□ -0.06
CLN3-206ENST00000360019 MTORP42345 2549 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 ATP6V0E1O15342 81 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 MDKP21741 143 aaPredicted RBP14.68□□□□□ -0.06
CLN3-206ENST00000360019 MLANAQ16655 118 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 C16orf82Q7Z2V1 217 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 LFNGQ8NES3 379 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 OR5R1Q8NH85 324 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms