RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RAXQ9Y2V3 346 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 YTHDF2Q9Y5A9 579 aaKnown RBP8.42□□□□□ -1.06
LIMA1-201ENST00000341247 VSTM5A8MXK1 200 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 SOD3P08294 240 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 OR10J1P30954 320 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 CDPF1Q6NVV7 123 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 LHFPL4Q7Z7J7 247 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 C1QL4Q86Z23 238 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 DMRTC2Q8IXT2 367 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-201ENST00000341247 OR2T6Q8NHC8 308 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 IGFBPL1Q8WX77 278 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 FLYWCH2Q96CP2 140 aaKnown RBP8.41□□□□□ -1.06
LIMA1-201ENST00000341247 TPSG1Q9NRR2 321 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 IGKV1OR2-108A0A075B7D4 117 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 H0YJW9 148 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 OR10J4P0C629 311 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 CDSNQ15517 529 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 C19orf35Q6ZS72 473 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 CORO2AQ92828 525 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 LSM4Q9Y4Z0 139 aaKnown RBP8.41□□□□□ -1.06
LIMA1-201ENST00000341247 IGHV3-21A0A0B4J1V1 117 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 SEC14L6B5MCN3 397 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 ITGB1BP1O14713 200 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 SLC25A17O43808 307 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 MPDU1O75352 247 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 RND2P52198 227 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 PRCDQ00LT1 54 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 RBPJQ06330 500 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 RAB31Q13636 194 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 PRSS8Q16651 343 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 OR10D4PQ8NGN7 298 aa8.41□□□□□ -1.06
LIMA1-201ENST00000341247 S100A8P05109 93 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 STAG3L2P0CL84 134 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 STAG3L3P0CL85 134 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 HOXA5P20719 270 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 S100PP25815 95 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 LOXP28300 417 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM37Q8WXS4 190 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 JKAMPQ9P055 326 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 IGHV1-69-2A0A0G2JMI3 117 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 FABP4P15090 132 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 COX7A1P24310 79 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 GCHFRP30047 84 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 LGALS4P56470 323 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 SSBP2P81877 361 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-201ENST00000341247 NCOR1P1Q9H4R4 102 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 NGBQ9NPG2 151 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 ZNF835Q9Y2P0 537 aa8.4□□□□□ -1.06
LIMA1-201ENST00000341247 TRBV20OR9-2A0A075B6H5 130 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 PPP1R2P9O14990 202 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 OR7C2O60412 319 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 CXorf1O96002 111 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 PFN1P07737 140 aaKnown RBP8.4□□□□□ -1.07
LIMA1-201ENST00000341247 CD3EP07766 207 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 S100A2P29034 98 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 RPL8P62917 257 aaKnown RBP8.4□□□□□ -1.07
LIMA1-201ENST00000341247 GAMTQ14353 236 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 PSG5Q15238 335 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 DIRC2Q96SL1 478 aa8.4□□□□□ -1.07
LIMA1-201ENST00000341247 RHOBP62745 196 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF833PQ6ZTB9 187 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 LINC01551Q86U37 167 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 OR4X1Q8NH49 305 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 NABP2Q9BQ15 211 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 GGACTQ9BVM4 153 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 CTDSP1Q9GZU7 261 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 PPP5D1E7EU14 171 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 CCL21O00585 134 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 CDX1P47902 265 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-201ENST00000341247 TMPRSS3P57727 454 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 ASPHD1Q5U4P2 390 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 HCP5Q6MZN7 132 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 TGIF2LXQ8IUE1 241 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM242Q9NWH2 141 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 MIOXQ9UGB7 285 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 SMIM6P0DI80 62 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 CNTFRP26992 372 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 MEF2CQ06413 473 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-201ENST00000341247 GAR1Q9NY12 217 aaKnown RBP8.39□□□□□ -1.07
LIMA1-201ENST00000341247 FUT9Q9Y231 359 aa8.39□□□□□ -1.07
LIMA1-201ENST00000341247 TRAV5A0A0B4J249 113 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 RNASE2P10153 161 aaKnown RBP8.38□□□□□ -1.07
LIMA1-201ENST00000341247 PMS2P11Q13670 270 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF430Q9H8G1 570 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-201ENST00000341247 LINC00574Q9H8X3 128 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 TRBV24-1A0A075B6N3 115 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 F6UZH7 168 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 PDE6DO43924 150 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 FABP1P07148 127 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 LINC00869P0C866 280 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 KCNIP2Q9NS61 270 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 CACNA1BQ00975 2339 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 LINC00587B1AMM8 73 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 LY86O95711 162 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 APOBEC3AP31941 199 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-201ENST00000341247 WT1-ASQ06250 92 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 POU2AF1Q16633 256 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 PYY3Q5JQD4 70 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 MORN5Q5VZ52 161 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 MUC15Q8N387 334 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms