RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SEC14L6B5MCN3 397 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 L7N2F9 121 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 AREGP15514 252 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 PI3P19957 117 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 C9orf66Q5T8R8 295 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 ZNF343Q6P1L6 599 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 MRGPRFQ96AM1 343 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 USMG5Q96IX5 58 aa12.17□□□□□ -0.46
CLN3-201ENST00000333496 WI2-2373I1.2A0A1W2PRP0 233 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 NPIPB5A8MRT5 1133 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 K7EIL1 84 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 OVOL1O14753 267 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 KRASP01116 189 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 TRBV12-3P01733 135 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 G6PCP35575 357 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 OR2B8PP59922 312 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 RHOGP84095 191 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 OPCMLQ14982 345 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 CCDC28AQ8IWP9 274 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 TERB2Q8NHR7 220 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 MRAPQ8TCY5 172 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 FAM212BQ9NTI7 297 aaPredicted RBP12.16□□□□□ -0.46
CLN3-201ENST00000333496 ZNF257Q9Y2Q1 563 aa12.16□□□□□ -0.46
CLN3-201ENST00000333496 RPS10-NUDT3A0A1W2PQS6 291 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 MPC2O95563 127 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 IGKV1-39P01597 117 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 IGKV1D-39P04432 117 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 CRYGCP07315 174 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 FGF2P09038 288 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 CTRB1P17538 263 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 AP2S1P53680 142 aaPredicted RBP12.15□□□□□ -0.46
CLN3-201ENST00000333496 RND3P61587 244 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 CTRB2Q6GPI1 263 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 SLC25A42Q86VD7 318 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 FANCD2OSQ96PS1 177 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 SORL1Q92673 2214 aa12.15□□□□□ -0.46
CLN3-201ENST00000333496 FAM223BA6NKX1 122 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 REG1AP05451 166 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 PGAM2P15259 253 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 PSMB6P28072 239 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 S100GP29377 79 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 PIGPP57054 158 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 ERVK-16P61578 105 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 FAM223AQ8IWN6 122 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 NSG2Q9Y328 171 aa12.15□□□□□ -0.47
CLN3-201ENST00000333496 IGLC7A0M8Q6 106 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 OR2J3O76001 311 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 KLK9Q2XQG4 91 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 C4orf46Q504U0 113 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 ACSM6Q6P461 480 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 OR10W1Q8NGF6 305 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 OR52B4Q8NGK2 314 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 MARCH1Q8TCQ1 289 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 SEC22AQ96IW7 307 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 COMMD5Q9GZQ3 224 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 PEF1Q9UBV8 284 aaKnown RBP12.14□□□□□ -0.47
CLN3-201ENST00000333496 KLK9Q9UKQ9 250 aa12.14□□□□□ -0.47
CLN3-201ENST00000333496 TEX50A0A1B0GTY4 177 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 DBX1A6NMT0 343 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 GOSR2O14653 212 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 TOR2AQ5JU69 321 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 TMED4Q7Z7H5 227 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 NECAP1Q8NC96 275 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 TP53RKQ96S44 253 aa12.13□□□□□ -0.47
CLN3-201ENST00000333496 CXCL2P19875 107 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 ZP3P21754 424 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 S100A11P31949 105 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 INSL3P51460 131 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 ATP5G2Q06055 141 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 KLF5Q13887 457 aaPredicted RBP12.12□□□□□ -0.47
CLN3-201ENST00000333496 C15orf32Q32M92 178 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 SCGB3A2Q96PL1 93 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 QTRT1Q9BXR0 403 aaKnown RBP12.12□□□□□ -0.47
CLN3-201ENST00000333496 DMRT1Q9Y5R6 373 aa12.12□□□□□ -0.47
CLN3-201ENST00000333496 B3GALNT1O75752 331 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 NDUFB8O95169 186 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 OR4E1P0C645 316 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 ECI1P42126 302 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 SURF2Q15527 256 aaPredicted RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 ZNF429Q86V71 674 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 COMMD7Q86VX2 200 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 C12orf45Q8N5I9 185 aaPredicted RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 OR1L8Q8NGR8 309 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 SRSF8Q9BRL6 282 aaKnown RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 RTBDNQ9BSG5 229 aaPredicted RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 NDUFA4L2Q9NRX3 87 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 FBXL7Q9UJT9 491 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 GPR132Q9UNW8 380 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 IGLV11-55A0A075B6I3 123 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 H0Y980 276 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 SAP30O75446 220 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 CTSDP07339 412 aaPredicted RBP12.11□□□□□ -0.47
CLN3-201ENST00000333496 H2BFSP57053 126 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 WT1-ASQ06250 92 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 FGL1Q08830 312 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 TMEM14BQ9NUH8 114 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 OR51B2Q9Y5P1 312 aa12.11□□□□□ -0.47
CLN3-201ENST00000333496 C3orf85A0A1B0GTC6 90 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 C15orf61A6NNL5 157 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms