RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 APELAP0DMC3 54 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 PAX1P15863 534 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 CD1BP29016 333 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 CCL20P78556 96 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 MLANAQ16655 118 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 BSXQ3C1V8 233 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 C19orf35Q6ZS72 473 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 SSX7Q7RTT5 188 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 SVBPQ8N300 66 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 PIP4P2Q8N4L2 257 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 TEX45Q8NA69 505 aa14.74□□□□□ -0.05
USP39-201ENST00000323701 METTL1Q9UBP6 276 aaKnown RBP14.74□□□□□ -0.05
USP39-201ENST00000323701 LY86O95711 162 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 RNASE2P10153 161 aaKnown RBP14.73□□□□□ -0.05
USP39-201ENST00000323701 CEACAM3P40198 252 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 RAB5CP51148 216 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 RPP30P78346 268 aaKnown RBP14.73□□□□□ -0.05
USP39-201ENST00000323701 NPCDR1Q9BY65 106 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 UMAD1C9J7I0 102 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 REG1AP05451 166 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 UBE2E1P51965 193 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 ELLP55199 621 aaPredicted RBP14.73□□□□□ -0.05
USP39-201ENST00000323701 PAX8Q06710 450 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 ZNF726P1Q15940 193 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 ACSM6Q6P461 480 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 TREML4Q6UXN2 200 aa14.73□□□□□ -0.05
USP39-201ENST00000323701 PSMG3Q9BT73 122 aaPredicted RBP14.73□□□□□ -0.05
USP39-201ENST00000323701 IGHV3OR16-10A0A075B7F0 116 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 SMCO3A2RU48 225 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 NPBWR1P48145 328 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 AKR1C8PQ5T2L2 129 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 SPSB3Q6PJ21 355 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 PPP1R27Q86WC6 154 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 CBLN2Q8IUK8 224 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 EAF1Q96JC9 268 aaPredicted RBP14.72□□□□□ -0.05
USP39-201ENST00000323701 WDR83OSQ9Y284 106 aa14.72□□□□□ -0.05
USP39-201ENST00000323701 CENPVL3A0A0U1RRI6 287 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 C9JQL5 133 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 SNRNP70P08621 437 aaKnown RBP14.71□□□□□ -0.05
USP39-201ENST00000323701 DEFA4P12838 97 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 SAA4P35542 130 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 LGALS4P56470 323 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 RAB11AP62491 216 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 GNB1P62873 340 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 S100A12P80511 92 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 TNXAQ16473 311 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 CLEC12BQ2HXU8 276 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 CENPVQ7Z7K6 275 aaPredicted RBP14.71□□□□□ -0.05
USP39-201ENST00000323701 SCRT1Q9BWW7 348 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 MMDQ15546 238 aa14.71□□□□□ -0.05
USP39-201ENST00000323701 IGLC7A0M8Q6 106 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 TSPAN15O95858 294 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 OR13C7P0DN81 318 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 AREGP15514 252 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 RAB2AP61019 212 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 C2orf83Q53S99 150 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 MINOS1Q5TGZ0 78 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 SEC11CQ9BY50 192 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 MLXQ9UH92 298 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 MINOS1-NBL1R4GNA1 71 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.7□□□□□ -0.062e-7■■■■■ 31.3
USP39-201ENST00000323701 SNCAP37840 140 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 COMPP49747 757 aaPredicted RBP14.7□□□□□ -0.06
USP39-201ENST00000323701 HES1Q14469 280 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 FAM120AOSQ5T036 256 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 RUSC1-AS1Q66K80 236 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 MMD2Q8IY49 270 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 MGST2Q99735 147 aa14.7□□□□□ -0.06
USP39-201ENST00000323701 ITPR2Q14571 2701 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 A0A096LNT2 108 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 J3QKU1 62 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 MOSP00540 346 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 DLK1P80370 383 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 RPP25LQ8N5L8 163 aaKnown RBP14.69□□□□□ -0.06
USP39-201ENST00000323701 MAPK1IP1LQ8NDC0 245 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 P2RX4Q99571 388 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 C12orf57Q99622 126 aa14.69□□□□□ -0.06
USP39-201ENST00000323701 INS-IGF2F8WCM5 200 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 CD5P06127 495 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 RPL35P42766 123 aaKnown RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 SERF2P84101 59 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 GCSAMLQ5JQS6 135 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 SFT2D1Q8WV19 159 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 RNF5Q99942 180 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 GGACTQ9BVM4 153 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 LSM4Q9Y4Z0 139 aaKnown RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 TIMM9Q9Y5J7 89 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 IGKV1OR2-108A0A075B7D4 117 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 TEX22C9J3V5 150 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 SFTA3P0C7M3 94 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 RPL27AP46776 148 aaKnown RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 AKR1D1P51857 326 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 MFAP2P55001 183 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 RCC1LQ96I51 464 aaKnown RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 ZMAT5Q9UDW3 170 aaKnown RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 SOX21Q9Y651 276 aaPredicted RBP14.68□□□□□ -0.06
USP39-201ENST00000323701 CSPG4Q6UVK1 2322 aa14.68□□□□□ -0.06
USP39-201ENST00000323701 NBR2O15453 112 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 IGHV3-48P01763 117 aa14.67□□□□□ -0.06
USP39-201ENST00000323701 ERHP84090 104 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms