RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 BSCL2Q96G97 398 aaPredicted RBP13.29□□□□□ -0.28
SDCBP-201ENST00000260130 CLCC1Q96S66 551 aa13.29□□□□□ -0.28
SDCBP-201ENST00000260130 RCL1Q9Y2P8 373 aaKnown RBP13.29□□□□□ -0.28
SDCBP-201ENST00000260130 WASHC3Q9Y3C0 194 aa13.29□□□□□ -0.28
SDCBP-201ENST00000260130 CDS2O95674 445 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 MT-ND4LP03901 98 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 C5orf30Q96GV9 206 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 RASL11BQ9BPW5 248 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 WNT10AQ9GZT5 417 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 LIN7CQ9NUP9 197 aaKnown RBP13.28□□□□□ -0.28
SDCBP-201ENST00000260130 AADACP22760 399 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 MMDQ15546 238 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 ZNF645Q8N7E2 425 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 OR4D5Q8NGN0 318 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 HIST1H2BAQ96A08 127 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 SCRT1Q9BWW7 348 aa13.28□□□□□ -0.28
SDCBP-201ENST00000260130 IGKV1D-13A0A0B4J2D9 117 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 C7orf77A4D0Y5 90 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 PPYP01298 95 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 IGKV1-13P0DP09 117 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 SPIN2AQ99865 258 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 SPIN2BQ9BPZ2 258 aa13.27□□□□□ -0.28
SDCBP-201ENST00000260130 C3orf85A0A1B0GTC6 90 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 M0R036 132 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 MPPED1O15442 326 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 APOA2P02652 100 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 CNTFRP26992 372 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 NHLH2Q02577 135 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 ZNF266Q14584 549 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 SLC35G3Q8N808 338 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 NPBQ8NG41 125 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 RNF5Q99942 180 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 SMDT1Q9H4I9 107 aa13.27□□□□□ -0.29
SDCBP-201ENST00000260130 A0A1B0GW64 132 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 NBR2O15453 112 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 IGHG2P01859 326 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 THBS3P49746 956 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 RHEBQ15382 184 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 ETV3LQ6ZN32 361 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 PDPNQ86YL7 162 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 HSD17B11Q8NBQ5 300 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 TP53RKQ96S44 253 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 TMEM222Q9H0R3 208 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 SLC35B3Q9H1N7 401 aa13.26□□□□□ -0.29
SDCBP-201ENST00000260130 UMAD1C9J7I0 102 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 IGKV1-16P04430 117 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 S100A6P06703 90 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 DUTP33316 252 aaKnown RBP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 EWSR1Q01844 656 aaKnown RBP eCLIP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 OR2C3Q8N628 320 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 ADTRPQ96IZ2 230 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 SH3BGRL3Q9H299 93 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 SLC35D1Q9NTN3 355 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 IGLV2-14P01704 120 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 AKR1C3P42330 323 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 SNRPEP62304 92 aaKnown RBP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 SLC35E3Q7Z769 313 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 CENPVQ7Z7K6 275 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 WIPF2Q8TF74 440 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 FLYWCH2Q96CP2 140 aaKnown RBP13.25□□□□□ -0.29
SDCBP-201ENST00000260130 SLC25A31Q9H0C2 315 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 KIAA1456Q9P272 454 aa13.25□□□□□ -0.29
SDCBP-201ENST00000260130 NDUFA3O95167 84 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 S100A8P05109 93 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 NKX2-1P43699 371 aaPredicted RBP13.24□□□□□ -0.29
SDCBP-201ENST00000260130 FHITP49789 147 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 RND3P61587 244 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 TMEM182Q6ZP80 229 aaPredicted RBP13.24□□□□□ -0.29
SDCBP-201ENST00000260130 ZNF695Q8IW36 515 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 TMEM56Q96MV1 263 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 TMEM56-RWDD3S4R434 201 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 DUXBA0A1W2PPF3 345 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 LINC00473A8K010 186 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 PITX3O75364 302 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 EIF3GO75821 320 aaKnown RBP eCLIP13.24□□□□□ -0.29
SDCBP-201ENST00000260130 B2MP61769 119 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 RPS16P62249 146 aaKnown RBP13.24□□□□□ -0.29
SDCBP-201ENST00000260130 C5orf64Q2M2E5 130 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 C11orf44Q8N8P7 122 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 SGMS2Q8NHU3 365 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 FAM213BQ8TBF2 198 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 DDB2Q92466 427 aa13.24□□□□□ -0.29
SDCBP-201ENST00000260130 C5orf52A6NGY3 159 aa13.23□□□□□ -0.29
SDCBP-201ENST00000260130 LINC01548A6NM66 108 aa13.23□□□□□ -0.29
SDCBP-201ENST00000260130 C11orf1Q9H5F2 150 aa13.23□□□□□ -0.29
SDCBP-201ENST00000260130 CCL28Q9NRJ3 127 aa13.23□□□□□ -0.29
SDCBP-201ENST00000260130 UBE2CO00762 179 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 RRHO14718 337 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 S100A9P06702 114 aaKnown RBP13.22□□□□□ -0.29
SDCBP-201ENST00000260130 GNRHRP30968 328 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 CLINT1Q14677 625 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 MSMO1Q15800 293 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 RTL8BQ17RB0 113 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 TBC1D26Q86UD7 250 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 OR5AU1Q8NGC0 362 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 CD300LFQ8TDQ1 290 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 HSD17B10Q99714 261 aaKnown RBP13.22□□□□□ -0.29
SDCBP-201ENST00000260130 FBXO7Q9Y3I1 522 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 TRRAPQ9Y4A5 3859 aa13.22□□□□□ -0.29
SDCBP-201ENST00000260130 FAM24AA6NFZ4 105 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms