RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CBLN4Q9NTU7 201 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 RALYQ9UKM9 306 aaKnown RBP17.43■□□□□ 0.38
TRIM28-201ENST00000253024 KLK10O43240 276 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 SUMO1P63165 101 aaKnown RBP17.43■□□□□ 0.38
TRIM28-201ENST00000253024 WNK2Q9Y3S1 2297 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 TDRG1Q3Y452 100 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 TEX38Q6PEX7 206 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 DDB2Q92466 427 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 ELOVL5Q9NYP7 299 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 RPH3ALQ9UNE2 315 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 H3BTX0 84 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 CT45A6P0DMU7 189 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 CT45A5P0DMU8 189 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 CT45A7P0DMV0 189 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 GLRXP35754 106 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 IGFBPL1Q8WX77 278 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 GAFA1Q96PS6 74 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 NABP2Q9BQ15 211 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 MRPL20Q9BYC9 149 aaKnown RBP17.42■□□□□ 0.38
TRIM28-201ENST00000253024 MAP1AP78559 2803 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-201ENST00000253024 KRTCAP3Q53RY4 240 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 TMEM18Q96B42 140 aa17.42■□□□□ 0.38
TRIM28-201ENST00000253024 SSBP3Q9BWW4 388 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-201ENST00000253024 F2RL2O00254 374 aa17.41■□□□□ 0.38
TRIM28-201ENST00000253024 SAA1P0DJI8 122 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-201ENST00000253024 ARHGAP32A7KAX9 2087 aa17.41■□□□□ 0.38
TRIM28-201ENST00000253024 RHOBP62745 196 aa17.41■□□□□ 0.38
TRIM28-201ENST00000253024 PAX5Q02548 391 aa17.41■□□□□ 0.38
TRIM28-201ENST00000253024 MRPL54Q6P161 138 aaKnown RBP17.41■□□□□ 0.38
TRIM28-201ENST00000253024 TM4SF5O14894 197 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 SRP14P37108 136 aaKnown RBP17.4■□□□□ 0.38
TRIM28-201ENST00000253024 CISD2Q8N5K1 135 aaKnown RBP17.4■□□□□ 0.38
TRIM28-201ENST00000253024 TRAV34A0A0B4J273 112 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 FCN1O00602 326 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 TGOLN2O43493 480 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 VENTXO95231 258 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 SELENOVP59797 346 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 CENPWQ5EE01 88 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 TRAT1Q6PIZ9 186 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 TCTEX1D1Q8N7M0 179 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 DSCAML1Q8TD84 2053 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 ZNF891A8MT65 544 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-201ENST00000253024 RPL15P61313 204 aaKnown RBP17.4■□□□□ 0.38
TRIM28-201ENST00000253024 TIMM23BQ5SRD1 257 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 HARBI1Q96MB7 349 aa17.4■□□□□ 0.38
TRIM28-201ENST00000253024 LSM4Q9Y4Z0 139 aaKnown RBP17.4■□□□□ 0.38
TRIM28-201ENST00000253024 PYYP10082 97 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 IRF2P14316 349 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 PRR27Q6MZM9 219 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 MS4A10Q96PG2 267 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 SNURFLB1AK76 121 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 LHBP01229 141 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 MZT1Q08AG7 82 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 OR1L6Q8NGR2 347 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 NEUROG1Q92886 237 aa17.39■□□□□ 0.37
TRIM28-201ENST00000253024 EREGO14944 169 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 ENSAO43768 121 aaKnown RBP17.38■□□□□ 0.37
TRIM28-201ENST00000253024 RAB31Q13636 194 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 LYPD2Q6UXB3 125 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 DIRC2Q96SL1 478 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 TMEM14BQ9NUH8 114 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 CUL9Q8IWT3 2517 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 TEX50A0A1B0GTY4 177 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 MBD3L4A6NDZ8 208 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-201ENST00000253024 MBD3L3A6NE82 208 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-201ENST00000253024 MBD3L5A6NJ08 208 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-201ENST00000253024 TOX4O94842 621 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 FOSL1P15407 271 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 CD40P25942 277 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 MBD3L2Q8NHZ7 208 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-201ENST00000253024 FKBP11Q9NYL4 201 aa17.38■□□□□ 0.37
TRIM28-201ENST00000253024 GATCO43716 136 aaKnown RBP17.37■□□□□ 0.37
TRIM28-201ENST00000253024 REC114Q7Z4M0 266 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 BAGE3Q86Y29 109 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 BAGE2Q86Y30 109 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 GBGT1Q8N5D6 347 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 MRPL18Q9H0U6 180 aaKnown RBP17.37■□□□□ 0.37
TRIM28-201ENST00000253024 LINC00869P0C866 280 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 TPSG1Q9NRR2 321 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 SERF1AO75920 110 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 CGB3P0DN86 165 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 CGB7P0DN87 165 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 RAB7AP51149 207 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 STUMQ69YW2 141 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 HCP5Q6MZN7 132 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 IGFL2Q6UWQ7 119 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 TOMM20LQ6UXN7 152 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 PIP4P1Q86T03 277 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 RITA1Q96K30 269 aa17.37■□□□□ 0.37
TRIM28-201ENST00000253024 HELTA6NFD8 242 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 MPDU1O75352 247 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 GNG4P50150 75 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 EAF1Q96JC9 268 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-201ENST00000253024 SLC25A10Q9UBX3 287 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-201ENST00000253024 LYNX1G3V0Z9 82 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 LYNX1P0DP58 116 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 CCKARP32238 428 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 CDKN1AP38936 164 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 TMEM144Q7Z5S9 345 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 MMD2Q8IY49 270 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms