RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SP6Q3SY56 376 aa16■□□□□ 0.15
CLN3-240ENST00000631023 ZNF57Q68EA5 555 aaPredicted RBP16■□□□□ 0.15
CLN3-240ENST00000631023 OR5B3Q8NH48 314 aa16■□□□□ 0.15
CLN3-240ENST00000631023 AKIP1Q9NQ31 210 aa16■□□□□ 0.15
CLN3-240ENST00000631023 IGHV4OR15-8A0A075B7B6 117 aa16■□□□□ 0.15
CLN3-240ENST00000631023 A0A087WW49 117 aa16■□□□□ 0.15
CLN3-240ENST00000631023 CGB1A6NKQ9 187 aa16■□□□□ 0.15
CLN3-240ENST00000631023 HIST1H1BP16401 226 aaKnown RBP16■□□□□ 0.15
CLN3-240ENST00000631023 CTRB1P17538 263 aa16■□□□□ 0.15
CLN3-240ENST00000631023 ZNF45Q02386 682 aa16■□□□□ 0.15
CLN3-240ENST00000631023 TRIQKQ629K1 86 aa16■□□□□ 0.15
CLN3-240ENST00000631023 CTRB2Q6GPI1 263 aa16■□□□□ 0.15
CLN3-240ENST00000631023 SGPP2Q8IWX5 399 aa16■□□□□ 0.15
CLN3-240ENST00000631023 NAA60Q9H7X0 242 aa16■□□□□ 0.15
CLN3-240ENST00000631023 KCNIP3Q9Y2W7 256 aa16■□□□□ 0.15
CLN3-240ENST00000631023 MEGF8Q7Z7M0 2845 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 C15orf61A6NNL5 157 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 AKR1C2P52895 323 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 DHODHQ02127 395 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 ZNF343Q6P1L6 599 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 TMEM56Q96MV1 263 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 HINT2Q9BX68 163 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 TMEM222Q9H0R3 208 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 NDUFA4L2Q9NRX3 87 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 TMEM14BQ9NUH8 114 aa15.99■□□□□ 0.15
CLN3-240ENST00000631023 IGLC7A0M8Q6 106 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 ANKRD34BA5PLL1 514 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 CRYM-AS1A6NIL9 109 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 CYB5BO43169 146 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 RBMXL2O75526 392 aaKnown RBP15.98■□□□□ 0.15
CLN3-240ENST00000631023 REG1AP05451 166 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 OR5AC1P0C628 307 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 ZP3P21754 424 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 DEFA5Q01523 94 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 FAM209BQ5JX69 171 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 RRNAD1Q96FB5 475 aaKnown RBP15.98■□□□□ 0.15
CLN3-240ENST00000631023 PEF1Q9UBV8 284 aaKnown RBP15.98■□□□□ 0.15
CLN3-240ENST00000631023 SORL1Q92673 2214 aa15.98■□□□□ 0.15
CLN3-240ENST00000631023 A6NHS1 94 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 OR2J3O76001 311 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 OR10W1Q8NGF6 305 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 RNASE11Q8TAA1 199 aaKnown RBP15.97■□□□□ 0.15
CLN3-240ENST00000631023 GLYATL2Q8WU03 294 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 DCUN1D4Q92564 292 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 LSM10Q969L4 123 aaKnown RBP15.97■□□□□ 0.15
CLN3-240ENST00000631023 SLC25A21Q9BQT8 299 aaPredicted RBP15.97■□□□□ 0.15
CLN3-240ENST00000631023 FBXL7Q9UJT9 491 aa15.97■□□□□ 0.15
CLN3-240ENST00000631023 CDS2O95674 445 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 OR13C7P0DN81 318 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 SLURP1P55000 103 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 BAK1Q16611 211 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 C15orf32Q32M92 178 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 C9orf66Q5T8R8 295 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 THYN1Q9P016 225 aa15.96■□□□□ 0.15
CLN3-240ENST00000631023 ZMAT5Q9UDW3 170 aaKnown RBP15.96■□□□□ 0.15
CLN3-240ENST00000631023 SEC14L6B5MCN3 397 aa15.96■□□□□ 0.14
CLN3-240ENST00000631023 OVOL1O14753 267 aa15.96■□□□□ 0.14
CLN3-240ENST00000631023 IGKV1-5P01602 117 aa15.96■□□□□ 0.14
CLN3-240ENST00000631023 AKR1C4P17516 323 aa15.96■□□□□ 0.14
CLN3-240ENST00000631023 MECP2P51608 486 aaKnown RBP15.96■□□□□ 0.14
CLN3-240ENST00000631023 EXOSC2Q13868 293 aaKnown RBP15.96■□□□□ 0.14
CLN3-240ENST00000631023 DLX4Q92988 240 aaPredicted RBP15.96■□□□□ 0.14
CLN3-240ENST00000631023 RBPMSQ93062 196 aaKnown RBP15.96■□□□□ 0.14
CLN3-240ENST00000631023 FANCD2OSQ96PS1 177 aa15.96■□□□□ 0.14
CLN3-240ENST00000631023 HOXD3P31249 432 aaPredicted RBP15.95■□□□□ 0.14
CLN3-240ENST00000631023 HSPE1P61604 102 aaKnown RBP15.95■□□□□ 0.14
CLN3-240ENST00000631023 WT1-ASQ06250 92 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 KLK9Q2XQG4 91 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 C19orf35Q6ZS72 473 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 LINC00299Q6ZSB3 139 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 REC114Q7Z4M0 266 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 GALNT14Q96FL9 552 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 KLK9Q9UKQ9 250 aa15.95■□□□□ 0.14
CLN3-240ENST00000631023 IGLV11-55A0A075B6I3 123 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 NAP1L6A6NFF2 107 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 DBX1A6NMT0 343 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 CNPY1Q3B7I2 92 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 ZNF429Q86V71 674 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 FAM219AQ8IW50 185 aa15.94■□□□□ 0.14
CLN3-240ENST00000631023 SDHCQ99643 169 aaPredicted RBP15.94■□□□□ 0.14
CLN3-240ENST00000631023 CENPXA8MT69 81 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 WIPF1O43516 503 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 P0C879 139 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 ANXA3P12429 323 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 INSL3P51460 131 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 IZUMO4Q1ZYL8 232 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 TMEM230Q96A57 120 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 CXorf58Q96LI9 332 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 PDCD10Q9BUL8 212 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 BATF3Q9NR55 127 aa15.93■□□□□ 0.14
CLN3-240ENST00000631023 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.92■□□□□ 0.14
CLN3-240ENST00000631023 PIGBOS1A0A0B4J2F0 54 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 PRCDQ00LT1 54 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 TATDN3Q17R31 274 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 TMED4Q7Z7H5 227 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 SELENOHQ8IZQ5 122 aaKnown RBP15.92■□□□□ 0.14
CLN3-240ENST00000631023 OR1L6Q8NGR2 347 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 EEF1AKMT3Q96AZ1 226 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 TMEM56-RWDD3S4R434 201 aa15.92■□□□□ 0.14
CLN3-240ENST00000631023 A0A0B4J293 547 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms