RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 LAMB4A4D0S4 1761 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 OR4C45A6NMZ5 311 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 ITGB1BP1O14713 200 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 SLC22A1O15245 554 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 EIF2B2P49770 351 aaKnown RBP0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 SKP1P63208 163 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 MGAT3Q09327 533 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 ZNF846Q147U1 533 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 TNFAIP8L2Q6P589 184 aaPredicted RBP0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 SLC51BQ86UW2 128 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 MAP1LC3AQ9H492 121 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 IMP3Q9NV31 184 aaKnown RBP0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 AK3Q9UIJ7 227 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 FUT9Q9Y231 359 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 SYNRGQ9UMZ2 1314 aa0.63□□□□□ -2.31
SMCHD1-207ENST00000581711 TNRC6BQ9UPQ9 1833 aaKnown RBP0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 JMJD1CQ15652 2540 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 ZNF462Q96JM2 2506 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 TRAV14DV4A0A0A6YYC5 116 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 IGHV1-69-2A0A0G2JMI3 117 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 IGHV3-7P01780 117 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 OCMP0CE72 109 aaPredicted RBP0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 POLR2GP62487 172 aaKnown RBP eCLIP0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 KISS1Q15726 138 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 KRTAP20-1Q3LI63 56 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 JOSD2Q8TAC2 188 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 AQP3Q92482 292 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 SERPINI1Q99574 410 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 YIPF3Q9GZM5 350 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 PLEKHJ1Q9NW61 149 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 RALGAPA2Q2PPJ7 1873 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 TTC21AQ8NDW8 1320 aa0.62□□□□□ -2.31
SMCHD1-207ENST00000581711 SETXQ7Z333 2677 aaKnown RBP0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 C1orf232A0A0U1RR37 186 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 GOLGA8KD6RF30 607 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 GOLGA8MH3BSY2 632 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 FAM228BP0C875 321 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 FABP9Q0Z7S8 132 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 NDUFA5Q16718 116 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 TEX36Q5VZQ5 186 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 CLEC6AQ6EIG7 209 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 FKBP14Q9NWM8 211 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 MDN1Q9NU22 5596 aa0.61□□□□□ -2.31
SMCHD1-207ENST00000581711 ANKRD17O75179 2603 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 FAM25EA8MYX2 175 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 EVPLLA8MZ36 301 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 CLPSP04118 112 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 SRP19P09132 144 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 BLVRAP53004 296 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 FXYD2P54710 66 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 MAP3K7CLP57077 242 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 RPL18Q07020 188 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 CDK10Q15131 360 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 Q8N402 240 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 C12orf29Q8N999 325 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 TRABDQ9H4I3 376 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 IL36BQ9NZH7 164 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 RSL24D1Q9UHA3 163 aaKnown RBP0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 USP9XQ93008 2570 aaPredicted RBP0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 RP1P56715 2156 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 ANAPC1Q9H1A4 1944 aa0.6□□□□□ -2.31
SMCHD1-207ENST00000581711 BPTFQ12830 3046 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 ALPK2Q86TB3 2170 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 C21orf140B9A014 251 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 DISC1C4P0D8 188 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 PFDN6O15212 129 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 KRT75O95678 551 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 RPS4Y1P22090 263 aaKnown RBP0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 RPL12P30050 165 aaKnown RBP0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 C1orf195Q5TG92 126 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 DIRAS2Q96HU8 199 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 ATP6V1G3Q96LB4 118 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 OBSCN-AS1Q96MR7 158 aa0.59□□□□□ -2.31
SMCHD1-207ENST00000581711 SPTBN4Q9H254 2564 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 KRT7P08729 469 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 METTL15P1P0C7V9 234 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 UBE2IP63279 158 aaKnown RBP0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 MLLT11Q13015 90 aaPredicted RBP0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 LCN15Q6UWW0 184 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 PLEKHG7Q6ZR37 379 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 ZNF550Q7Z398 422 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 OR51I2Q9H344 312 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 CISHQ9NSE2 258 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 OR5AC2Q9NZP5 309 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 CHD8Q9HCK8 2581 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 RYR1P21817 5038 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 COL4A5P29400 1685 aa0.58□□□□□ -2.32
SMCHD1-207ENST00000581711 SETD2Q9BYW2 2564 aaPredicted RBP0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 TRBV6-7A0A0A0MS04 114 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 SSNA1O43805 119 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 NOS1APO75052 506 aaPredicted RBP0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 YEATS4O95619 227 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 SHBGP04278 402 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 COX5BP10606 129 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 FGF6P10767 208 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 KCNE1P15382 129 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 TMED1Q13445 227 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 AAED1Q7RTV5 226 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 WFDC11Q8NEX6 87 aa0.57□□□□□ -2.32
SMCHD1-207ENST00000581711 ROPN1LQ96C74 230 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms