RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MRPL41Q8IXM3 137 aaKnown RBP10.9□□□□□ -0.66
CCDC40-209ENST00000573474 Q8N9W7 124 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 RBM14Q96PK6 669 aaKnown RBP10.9□□□□□ -0.66
CCDC40-209ENST00000573474 ARPC5LQ9BPX5 153 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 YAE1D1Q9NRH1 226 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 PITPNC1Q9UKF7 332 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 U3KQ87 197 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 NOTCH2Q04721 2471 aa10.9□□□□□ -0.67
CCDC40-209ENST00000573474 A6NDX4 124 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 E7EUB6 86 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 H3BUX3 64 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 CNIH1O95406 144 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 CA2P00918 260 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 IFNA10P01566 189 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 ATP5IP56385 69 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-209ENST00000573474 ERHP84090 104 aaKnown RBP10.89□□□□□ -0.67
CCDC40-209ENST00000573474 NHLH2Q02577 135 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 C10orf55Q5SWW7 151 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 ZNF562Q6V9R5 426 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 SPNS3Q6ZMD2 512 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 OR4C12Q96R67 309 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 RASL11BQ9BPW5 248 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 SLC25A33Q9BSK2 321 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 MOB4Q9Y3A3 225 aa10.89□□□□□ -0.67
CCDC40-209ENST00000573474 FLNAP21333 2647 aaKnown RBP10.89□□□□□ -0.67
CCDC40-209ENST00000573474 TEX15Q9BXT5 2789 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 MDFIC2A0A1B0GVS7 189 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 CGB1A6NKQ9 187 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 FGF16O43320 207 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 CST7O76096 145 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 SCAF4O95104 1147 aaKnown RBP10.88□□□□□ -0.67
CCDC40-209ENST00000573474 METTL15P1P0C7V9 234 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 TMEM267Q0VDI3 215 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-209ENST00000573474 FXYD3Q14802 87 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 CLEC9AQ6UXN8 241 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 OR10W1Q8NGF6 305 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 C22orf15Q8WYQ4 148 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 BSCL2Q96G97 398 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-209ENST00000573474 SRSF8Q9BRL6 282 aaKnown RBP10.88□□□□□ -0.67
CCDC40-209ENST00000573474 GON7Q9BXV9 100 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 PRDM13Q9H4Q3 707 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 FBXL17Q9UF56 701 aa10.88□□□□□ -0.67
CCDC40-209ENST00000573474 PAIP2BQ9ULR5 123 aaKnown RBP10.88□□□□□ -0.67
CCDC40-209ENST00000573474 MYO9AB2RTY4 2548 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 A0A1B0GW64 132 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 C15orf62A8K5M9 175 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HLA-DRB1P01911 266 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 OR8U8P0C7N1 319 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HNF1AP20823 631 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SRP14P37108 136 aaKnown RBP10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SNCAP37840 140 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HTR2BP41595 481 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 IER3P46695 156 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 RAB11AP62491 216 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HBG1P69891 147 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HBG2P69892 147 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 CX3CL1P78423 397 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SSBP2P81877 361 aaPredicted RBP10.87□□□□□ -0.67
CCDC40-209ENST00000573474 LY6EQ16553 131 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 Q6YL49 198 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 C16orf82Q7Z2V1 217 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 HSD17B13Q7Z5P4 300 aaPredicted RBP10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SLC51BQ86UW2 128 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 TMEM219Q86XT9 240 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SLC24A4Q8NFF2 622 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 OR1S2Q8NGQ3 325 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 OR5R1Q8NH85 324 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 SRSF12Q8WXF0 261 aaKnown RBP10.87□□□□□ -0.67
CCDC40-209ENST00000573474 TMEM160Q9NX00 188 aa10.87□□□□□ -0.67
CCDC40-209ENST00000573474 CSPG4Q6UVK1 2322 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 TET2Q6N021 2002 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-209ENST00000573474 BTBD17A6NE02 478 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 TEX22C9J3V5 150 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 M0QZK8 103 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 OR13C7P0DN81 318 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 NPY1RP25929 384 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 WT1-ASQ06250 92 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 BSXQ3C1V8 233 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 C2orf83Q53S99 150 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 IL17RELQ6ZVW7 336 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 STPG2Q8N412 459 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 TMEM217Q8N7C4 229 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 C5orf56Q8N8D9 126 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 OR5C1Q8NGR4 320 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 ZNF471Q9BX82 626 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-209ENST00000573474 SMIM3Q9BZL3 60 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 SLA2Q9H6Q3 261 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 CYTL1Q9NRR1 136 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 TNCP24821 2201 aa10.86□□□□□ -0.67
CCDC40-209ENST00000573474 BORCS7-ASMTA0A0B4J1R7 106 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 IGHV7-81A0A0B4J1V7 117 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 IGLC7A0M8Q6 106 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 PMS2P5A8MQ11 134 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 JTBO76095 146 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 IGHV4-59P01825 116 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 FOSL1P15407 271 aa10.85□□□□□ -0.67
CCDC40-209ENST00000573474 SUB1P53999 127 aaKnown RBP eCLIP10.85□□□□□ -0.67
CCDC40-209ENST00000573474 UBA52P62987 128 aaKnown RBP10.85□□□□□ -0.67
CCDC40-209ENST00000573474 EIF5AP63241 154 aaKnown RBP10.85□□□□□ -0.67
CCDC40-209ENST00000573474 SLC38A11Q08AI6 406 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms