RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 SRP19P09132 144 aaKnown RBP13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 RNASEH2CQ8TDP1 164 aaKnown RBP13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 HIST1H4GQ99525 98 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 RAXQ9Y2V3 346 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 PIKFYVEQ9Y2I7 2098 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 FOXI3A8MTJ6 420 aaPredicted RBP13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 LGALS3P17931 250 aaKnown RBP13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 FAM159AQ6UWV7 190 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 A8MXK9 166 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 CGAP01215 116 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 TRGV3P03979 118 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 FAM201AQ5SY85 155 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 LINC00518Q8N0U6 118 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 IL36BQ9NZH7 164 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 DMRT1Q9Y5R6 373 aa13.92□□□□□ -0.18
PCDHA1-203ENST00000504120 FAM186AA6NE01 2351 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 SPTA1P02549 2419 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 PAPPA-AS1Q5QFB9 102 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 CENPVQ7Z7K6 275 aaPredicted RBP13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 PMCHL2Q9BQD1 86 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 NEUROG3Q9Y4Z2 214 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 TRAV14DV4A0A0A6YYC5 116 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 LINC00271P0C7V0 271 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 LOC107984156A0A0G2JMH3 177 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 J3QRE1 110 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 CBLN1P23435 193 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 ARL17AQ8IVW1 177 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 C9orf106Q8NAJ2 232 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 COPS9Q8WXC6 57 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 GTF3AQ92664 365 aaKnown RBP13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 ANK1P16157 1881 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 C17orf100A8MU93 164 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 HIST1H1AQ02539 215 aaPredicted RBP13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 ZNF525Q8N782 197 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 OR4D5Q8NGN0 318 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 C18orf12Q96KH6 178 aa13.91□□□□□ -0.18
PCDHA1-203ENST00000504120 ANKRD36A6QL64 1941 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 SLC25A28Q96A46 364 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 ABHD17AQ96GS6 310 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 DCTN5Q9BTE1 182 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 ZSWIM8A7E2V4 1837 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 IGHV3-35A0A0C4DH35 117 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 PRSS8Q16651 343 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 TEX45Q8NA69 505 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 PLPPR1Q8TBJ4 325 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 MRPL20Q9BYC9 149 aaKnown RBP13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 SVILO95425 2214 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 TRBV20OR9-2A0A075B6H5 130 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 FBLL1A6NHQ2 334 aaKnown RBP13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 PEX7O00628 323 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 BTCP35070 178 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 FBXL7Q9UJT9 491 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 IGKV1D-33P01593 117 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 IGKV1-33P01594 117 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 CELA3BP08861 270 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 ZNF56Q15929 161 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 C21orf62Q9NYP8 219 aa13.9□□□□□ -0.18
PCDHA1-203ENST00000504120 TDRD6O60522 2096 aaKnown RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 OTX1P32242 354 aaPredicted RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 IGHV3OR16-10A0A075B7F0 116 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 CIRBPQ14011 172 aaKnown RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 FAM89BQ8N5H3 189 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 A0A087WWC5 75 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 LOC102724200A0A096LPH7 203 aaPredicted RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 YPEL1O60688 119 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 OR52E5Q8NH55 327 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 LYZL4Q96KX0 146 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 YPEL2Q96QA6 119 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 FOXA2Q9Y261 457 aaPredicted RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 IGKV1-9A0A0C4DH69 117 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 SOD3P08294 240 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 TBR1Q16650 682 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 FMC1Q96HJ9 113 aa13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 SOX21Q9Y651 276 aaPredicted RBP13.89□□□□□ -0.19
PCDHA1-203ENST00000504120 A0A0G2JLM5 398 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 TRAV9-1A0A075B6T8 112 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 H7C2G1 150 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 MPZP25189 248 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 FAM74A4Q5TZK3 123 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 C7orf71A4D174 169 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 ZFP36L1Q07352 338 aaKnown RBP13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 JOSD1Q15040 202 aaPredicted RBP13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 ARPC1AQ92747 370 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 PPP1R27Q86WC6 154 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 MOB4Q9Y3A3 225 aa13.88□□□□□ -0.19
PCDHA1-203ENST00000504120 BIVMQ86UB2 503 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 FAM131CQ96AQ9 280 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 KLK15Q9H2R5 256 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 SCO2A0A1W2PP80 73 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 PRSS2P07478 247 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 LRTM2Q8N967 370 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 ZNF497Q6ZNH5 498 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 RNF126Q9BV68 326 aa13.87□□□□□ -0.19
PCDHA1-203ENST00000504120 PPP1R17O96001 155 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 FAM209BQ5JX69 171 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 TMEM144Q7Z5S9 345 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 WFIKKN1Q96NZ8 548 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 SDF2L1Q9HCN8 221 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 A0A1B0GW15 77 aa13.86□□□□□ -0.19
PCDHA1-203ENST00000504120 FAM181BA6NEQ2 426 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms