RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 K7ESF4 209 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 USF1P22415 310 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 BHLHA15Q7RTS1 189 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM256Q8N2U0 113 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR1L1Q8NH94 360 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM158Q8WZ71 300 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 HDHD3Q9BSH5 251 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 VAMP8Q9BV40 100 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 LAMP3Q9UQV4 416 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 U3KQA8 63 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF253O75346 499 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 SCGB1C2P0DMR2 95 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 TAS2R45P59539 299 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 STPG4Q8N801 248 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CIB3Q96Q77 187 aaPredicted RBP4.44□□□□□ -1.7
SYNE1-220ENST00000471834 COMMD5Q9GZQ3 224 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CEBPDP49716 269 aaPredicted RBP4.44□□□□□ -1.7
SYNE1-220ENST00000471834 PLP1P60201 277 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 LYZP61626 148 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 UBE2V1Q13404 147 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CEACAM16Q2WEN9 425 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 TSPO2Q5TGU0 170 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 RNASE8Q8TDE3 154 aaKnown RBP4.44□□□□□ -1.7
SYNE1-220ENST00000471834 OR2H1Q9GZK4 316 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 ARID1AO14497 2285 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 LIFP15018 202 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 HTN1P15515 57 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 COX7A1P24310 79 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 NPY1RP25929 384 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 AMTP48728 403 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 VAMP3Q15836 100 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CCL17Q92583 94 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 OPN3Q9H1Y3 402 aaPredicted RBP4.44□□□□□ -1.7
SYNE1-220ENST00000471834 MS4A5Q9H3V2 200 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 FBXL7Q9UJT9 491 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 PSG11Q9UQ72 335 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 MYO9BQ13459 2157 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 H3BVH4 76 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 IFNL4K9M1U5 179 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 M0R1X1 148 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 KRASP01116 189 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 EGR1P18146 543 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CRYBB3P26998 211 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 FOXI2Q6ZQN5 318 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 CT55Q8WUE5 264 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 ELOVL1Q9BW60 279 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 NPCDR1Q9BY65 106 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 OCIAD1Q9NX40 245 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM30CPA0ZSE6 113 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 VWC2LB2RUY7 222 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 ORM2P19652 201 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 RPL29P47914 159 aaKnown RBP4.44□□□□□ -1.7
SYNE1-220ENST00000471834 PSG7Q13046 419 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM136Q6ZRR5 245 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 ST6GALNAC3Q8NDV1 305 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 OR1K1Q8NGR3 316 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 LHX4Q969G2 390 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 IGF2BP2-AS1Q96M15 143 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 ATG101Q9BSB4 218 aa4.44□□□□□ -1.7
SYNE1-220ENST00000471834 NCOA6Q14686 2063 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 A0A0J9YW62 118 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SHISA9B4DS77 424 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 CLDN14O95500 239 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 CT45A10P0DMU9 189 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SRD5A1P18405 259 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 GNG4P50150 75 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM30BQ3MIR4 351 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 NEUROG1Q92886 237 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF257Q9Y2Q1 563 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 TRAV34A0A0B4J273 112 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 LINC01546A6NGU7 62 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 C17orf98A8MV24 154 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 NDUFB3O43676 98 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 PIGYQ3MUY2 71 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF497Q6ZNH5 498 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 Q8IYB0 196 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 LYG1Q8N1E2 194 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 MUC15Q8N387 334 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 OR2J1Q9GZK6 312 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ZDHHC11Q9H8X9 412 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 UFC1Q9Y3C8 167 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SEC16AO15027 2179 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 CACNA1EQ15878 2313 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 C21orf140B9A014 251 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 PDGFBP01127 241 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SNRPCP09234 159 aaKnown RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 COX5AP20674 150 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 G6PCP35575 357 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF154Q13106 437 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF66Q6ZN08 573 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 OR2T6Q8NHC8 308 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 IL36BQ9NZH7 164 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 UQCR10Q9UDW1 63 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 HYPMO75409 117 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 HLA-DQA1P01909 254 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ADH4P08319 380 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 HNRNPA3P51991 378 aaKnown RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 KIR3DS1Q14943 382 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SMIM21Q3B7S5 101 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms