RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 KLF2Q9Y5W3 355 aaPredicted RBP15.29■□□□□ 0.04
USP39-202ENST00000409025 INS-IGF2F8WCM5 200 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 SNAPINO95295 136 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 IGKV1D-33P01593 117 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 IGKV1-33P01594 117 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 HAGHQ16775 308 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 TPTE2P1Q5T6R2 138 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 RPP25LQ8N5L8 163 aaKnown RBP15.29■□□□□ 0.04
USP39-202ENST00000409025 OR10W1Q8NGF6 305 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 OR10G4Q8NGN3 311 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 OR10G9Q8NGN4 311 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 OR10G7Q8NGN6 311 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 SUN5Q8TC36 379 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 SLC35B3Q9H1N7 401 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 DPM3Q9P2X0 92 aa15.29■□□□□ 0.04
USP39-202ENST00000409025 IGSF10Q6WRI0 2623 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 MAP1LC3B2A6NCE7 125 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 ZFP36P26651 326 aaKnown RBP15.28■□□□□ 0.04
USP39-202ENST00000409025 CEACAM3P40198 252 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 BSXQ3C1V8 233 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 ACOT6Q3I5F7 207 aaPredicted RBP15.28■□□□□ 0.04
USP39-202ENST00000409025 SSX7Q7RTT5 188 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.28■□□□□ 0.04
USP39-202ENST00000409025 CLDND2Q8NHS1 167 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 MAP1LC3BQ9GZQ8 125 aa15.28■□□□□ 0.04
USP39-202ENST00000409025 FNDC10F2Z333 226 aa15.27■□□□□ 0.04
USP39-202ENST00000409025 RNF224P0DH78 156 aa15.27■□□□□ 0.04
USP39-202ENST00000409025 RNASE2P10153 161 aaKnown RBP15.27■□□□□ 0.04
USP39-202ENST00000409025 ARSJQ5FYB0 599 aaPredicted RBP15.27■□□□□ 0.04
USP39-202ENST00000409025 SPOCK3Q9BQ16 436 aa15.27■□□□□ 0.04
USP39-202ENST00000409025 ACTR3CQ9C0K3 210 aaPredicted RBP15.27■□□□□ 0.04
USP39-202ENST00000409025 BPESC1Q9GZL8 116 aa15.27■□□□□ 0.04
USP39-202ENST00000409025 CTXND1A0A1B0GTU2 59 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 A0A1W2PPI3 338 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 OPRK1P41145 380 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 PDLIM4P50479 330 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 FGF8P55075 233 aaPredicted RBP15.27■□□□□ 0.03
USP39-202ENST00000409025 KLRD1Q13241 179 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 ZNF506Q5JVG8 444 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 MMD2Q8IY49 270 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 IGFBPL1Q8WX77 278 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 CCL19Q99731 98 aa15.27■□□□□ 0.03
USP39-202ENST00000409025 TNCP24821 2201 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 ODF3BA8MYP8 253 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 CYB5BO43169 146 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 IGHV4-39P01824 125 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 PSG5Q15238 335 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 HCP5Q6MZN7 132 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 TEPPQ6URK8 271 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 VMO1Q7Z5L0 202 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 ZNF843Q8N446 348 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 MGST2Q99735 147 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 RNF5Q99942 180 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 TPSG1Q9NRR2 321 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 KCNIP2Q9NS61 270 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 GNG13Q9P2W3 67 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 ARHGAP32A7KAX9 2087 aa15.26■□□□□ 0.03
USP39-202ENST00000409025 E7EUB6 86 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 CRYGBP07316 175 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 LCN2P80188 198 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 RAB31Q13636 194 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 KHDC3LQ587J8 217 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 FAM122CQ6P4D5 195 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 SLC25A22Q9H936 323 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 UNKLQ9H9P5 680 aaKnown RBP15.25■□□□□ 0.03
USP39-202ENST00000409025 TMA7Q9Y2S6 64 aaKnown RBP15.25■□□□□ 0.03
USP39-202ENST00000409025 LSM4Q9Y4Z0 139 aaKnown RBP15.25■□□□□ 0.03
USP39-202ENST00000409025 CGB1A6NKQ9 187 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 CNTFRP26992 372 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 ICAM4Q14773 271 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 PRSS8Q16651 343 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 MRGPRG-AS1Q2M3A8 158 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 C10orf55Q5SWW7 151 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 LDLRAD2Q5SZI1 272 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 GGTLC1Q9BX51 225 aa15.25■□□□□ 0.03
USP39-202ENST00000409025 IGHV2-70DA0A0C4DH43 119 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 LOC102723971A0A1B0GUV8 181 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 TIMM23O14925 209 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 ACTL6BO94805 426 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 HSPB1P04792 205 aaKnown RBP15.24■□□□□ 0.03
USP39-202ENST00000409025 OR13C7P0DN81 318 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 MAS1LP35410 378 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 SUB1P53999 127 aaKnown RBP eCLIP15.24■□□□□ 0.036e-9■■■□□ 18
USP39-202ENST00000409025 LMO4P61968 165 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 MRPL41Q8IXM3 137 aaKnown RBP15.24■□□□□ 0.03
USP39-202ENST00000409025 RXFP4Q8TDU9 374 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 METTL1Q9UBP6 276 aaKnown RBP15.24■□□□□ 0.03
USP39-202ENST00000409025 SIGLEC9Q9Y336 463 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 HILPDAQ9Y5L2 63 aa15.24■□□□□ 0.03
USP39-202ENST00000409025 ZFP92A6NM28 416 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 IFNA1P01562 189 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 PAX2Q02962 417 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 WT1-ASQ06250 92 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 C1orf159Q96HA4 380 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 PXMP4Q9Y6I8 212 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 SRP19P09132 144 aaKnown RBP15.23■□□□□ 0.03
USP39-202ENST00000409025 BCL2P10415 239 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 NPBWR1P48145 328 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 CDC34P49427 236 aaPredicted RBP15.23■□□□□ 0.03
USP39-202ENST00000409025 TNXAQ16473 311 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms