RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SAA2P0DJI9 122 aaPredicted RBP16.96■□□□□ 0.31
CLK3-202ENST00000395066 TDRG1Q3Y452 100 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 CT45A1Q5HYN5 189 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 TPTE2P1Q5T6R2 138 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 CYB5R2Q6BCY4 276 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 TEX43Q6ZNM6 134 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 CT45A3Q8NHU0 189 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 C20orf144Q9BQM9 153 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 TTC28Q96AY4 2481 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 ACTL6BO94805 426 aa16.96■□□□□ 0.3
CLK3-202ENST00000395066 RPLP1P05386 114 aaKnown RBP16.96■□□□□ 0.3
CLK3-202ENST00000395066 CRISP2P16562 243 aa16.96■□□□□ 0.3
CLK3-202ENST00000395066 GNG10P50151 68 aa16.96■□□□□ 0.3
CLK3-202ENST00000395066 AARDQ4LEZ3 155 aa16.96■□□□□ 0.3
CLK3-202ENST00000395066 MRPL52Q86TS9 123 aaKnown RBP16.96■□□□□ 0.3
CLK3-202ENST00000395066 ITLN1Q8WWA0 313 aa16.96■□□□□ 0.3
CLK3-202ENST00000395066 MRPL18Q9H0U6 180 aaKnown RBP16.96■□□□□ 0.3
CLK3-202ENST00000395066 SLC17A3O00476 420 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 SERF1AO75920 110 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 RPP30P78346 268 aaKnown RBP16.95■□□□□ 0.3
CLK3-202ENST00000395066 HLA-DRB5Q30154 266 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 TRAT1Q6PIZ9 186 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 STPG3Q8N7X2 389 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 SARAFQ96BY9 339 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 IL36BQ9NZH7 164 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 SLC25A15Q9Y619 301 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 SPAARA0A1B0GVQ0 90 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 ESDP10768 282 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 C17orf58Q2M2W7 97 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 OR4A47Q6IF82 309 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 SNRNP40Q96DI7 357 aaKnown RBP16.95■□□□□ 0.3
CLK3-202ENST00000395066 HSPB9Q9BQS6 159 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 MIEN1Q9BRT3 115 aa16.95■□□□□ 0.3
CLK3-202ENST00000395066 TRAV9-1A0A075B6T8 112 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 AHRRA9YTQ3 701 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 EFNB3Q15768 340 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 DDB2Q92466 427 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 DMXL2Q8TDJ6 3036 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 CA2P00918 260 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 CGAP01215 116 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 FRMD6-AS1P0C7T7 363 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 IGFBP2P18065 325 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 RANP62826 216 aaKnown RBP16.94■□□□□ 0.3
CLK3-202ENST00000395066 LYG1Q8N1E2 194 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 TMEM208Q9BTX3 173 aa16.94■□□□□ 0.3
CLK3-202ENST00000395066 LSM4Q9Y4Z0 139 aaKnown RBP16.94■□□□□ 0.3
CLK3-202ENST00000395066 K7EN84 100 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 F2RL2O00254 374 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 IRF2P14316 349 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 TMEM183BQ1AE95 376 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 DEFB109BQ30KR1 87 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 A6NNC1 897 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 C15orf61A6NNL5 157 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 MMP23AO75900 390 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 GCHFRP30047 84 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 CDKN1AP38936 164 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 RPL31P62899 125 aaKnown RBP16.93■□□□□ 0.3
CLK3-202ENST00000395066 OR4P4Q8NGL7 312 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 PAM16Q9Y3D7 125 aa16.93■□□□□ 0.3
CLK3-202ENST00000395066 DLEU1O43261 78 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 GATA2P23769 480 aaPredicted RBP16.92■□□□□ 0.3
CLK3-202ENST00000395066 NPY1RP25929 384 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 DEFB124Q8NES8 71 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 SLC24A4Q8NFF2 622 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 OR5AU1Q8NGC0 362 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 OR1L6Q8NGR2 347 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 LOXL4Q96JB6 756 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 NPVFQ9HCQ7 196 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 DCAF16Q9NXF7 216 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 DSCAML1Q8TD84 2053 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 TRAV17A0A0B4J275 112 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 BAGE3Q86Y29 109 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 BAGE2Q86Y30 109 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 OR52E5Q8NH55 327 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 OR4S2Q8NH73 311 aa16.92■□□□□ 0.3
CLK3-202ENST00000395066 FCN1O00602 326 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 VN1R17PQ8TDU5 208 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 VAMP8Q9BV40 100 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 ADGRG4Q8IZF6 3080 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 LGALS4P56470 323 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 TMPRSS3P57727 454 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 OR5I1Q13606 314 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 KRTCAP3Q53RY4 240 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 TEPPQ6URK8 271 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 MIR17HGQ75NE6 70 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 PPP1R35Q8TAP8 253 aa16.91■□□□□ 0.3
CLK3-202ENST00000395066 RAI1Q7Z5J4 1906 aaPredicted RBP16.91■□□□□ 0.3
CLK3-202ENST00000395066 FAM90A9PA6NNJ1 464 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 IER3P46695 156 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 ZNF474Q6S9Z5 364 aaPredicted RBP16.9■□□□□ 0.3
CLK3-202ENST00000395066 C22orf34Q6ZV56 151 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 FAM216AQ8WUB2 273 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 SAMD10Q9BYL1 202 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 IDI2-AS1Q9NZ38 188 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 GOLT1BQ9Y3E0 138 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 A8MXE2 369 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 F2Z2F3 143 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 MLANAQ16655 118 aa16.9■□□□□ 0.3
CLK3-202ENST00000395066 IGKV1-16P04430 117 aa16.89■□□□□ 0.29
CLK3-202ENST00000395066 KLF3P57682 345 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 193.5 ms