RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SUB1P53999 127 aaKnown RBP eCLIP13.42□□□□□ -0.26
PCDH1-203ENST00000394536 C9orf106Q8NAJ2 232 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 OR5R1Q8NH85 324 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 C11orf1Q9H5F2 150 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 MBNL3Q9NUK0 354 aaKnown RBP13.42□□□□□ -0.26
PCDH1-203ENST00000394536 C15orf62A8K5M9 175 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 H3BTX0 84 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 SLC25A5P05141 298 aaKnown RBP13.42□□□□□ -0.26
PCDH1-203ENST00000394536 SRIP30626 198 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 RNF7Q9UBF6 113 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 ARL2-SNX15V9GYD0 113 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 BRS3P32247 399 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 MORN2Q502X0 79 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 HSBP1L1C9JCN9 74 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 IBA57Q5T440 356 aaKnown RBP13.41□□□□□ -0.26
PCDH1-203ENST00000394536 OR4A47Q6IF82 309 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 ZNF114Q8NC26 417 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 OR2D3Q8NGH3 330 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 FOXH1O75593 365 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 FAM19A2Q8N3H0 131 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 JPT1Q9UK76 154 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 PRNDQ9UKY0 176 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 TIMP3P35625 211 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 KIR2DS2P43631 304 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 TNFSF10P50591 281 aa13.41□□□□□ -0.26
PCDH1-203ENST00000394536 CHRNB4P30926 498 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 Q56UQ5 140 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 ZCCHC24Q8N2G6 241 aaKnown RBP13.4□□□□□ -0.26
PCDH1-203ENST00000394536 OR1B1Q8NGR6 318 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 GGTLC1Q9BX51 225 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 hADV38S2A0JD32 116 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 CA1P00915 261 aaPredicted RBP13.4□□□□□ -0.26
PCDH1-203ENST00000394536 TEX38Q6PEX7 206 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 WNT10AQ9GZT5 417 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 LINC00869P0C866 280 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 PAFAH1B2P68402 229 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 EFNB3Q15768 340 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 CD177Q8N6Q3 437 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 FAM216BQ8N7L0 139 aa13.4□□□□□ -0.26
PCDH1-203ENST00000394536 IGHV2OR16-5A0A0B4J2B6 119 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 CNIH1O95406 144 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 CSN3P07498 182 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 HCP5Q6MZN7 132 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 WDR73Q6P4I2 378 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 ZGRF1Q86YA3 2104 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 RPLP1P05386 114 aaKnown RBP13.39□□□□□ -0.27
PCDH1-203ENST00000394536 REG1AP05451 166 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 BPIFB3P59826 476 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 SRSF6Q13247 344 aaKnown RBP13.39□□□□□ -0.27
PCDH1-203ENST00000394536 ADTRPQ96IZ2 230 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 ZNF137PP52743 207 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 GBGT1Q8N5D6 347 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 ZCCHC14Q8WYQ9 949 aaKnown RBP13.39□□□□□ -0.27
PCDH1-203ENST00000394536 MGST2Q99735 147 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 TXNDC17Q9BRA2 123 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 DCAF16Q9NXF7 216 aa13.39□□□□□ -0.27
PCDH1-203ENST00000394536 A8MWP6 167 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 PRR33A8MZF0 331 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 NPIPB11E5RHQ5 1161 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 CHEK1O14757 476 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 EREGO14944 169 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 RBFOX2O43251 390 aaKnown RBP eCLIP13.38□□□□□ -0.27
PCDH1-203ENST00000394536 APCSP02743 223 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 MLANAQ16655 118 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 KRTAP27-1Q3LI81 207 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 MOB3BQ86TA1 216 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 IL36BQ9NZH7 164 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 J3QW42 95 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 M0R2Z0 102 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 LBHQ53QV2 105 aaPredicted RBP13.38□□□□□ -0.27
PCDH1-203ENST00000394536 ZNF295-AS1Q8N0V1 137 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 ZNF355PQ9NSJ1 428 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 MAS1LP35410 378 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 FLYWCH2Q96CP2 140 aaKnown RBP13.38□□□□□ -0.27
PCDH1-203ENST00000394536 AGMATQ9BSE5 352 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 TMEM106BQ9NUM4 274 aa13.38□□□□□ -0.27
PCDH1-203ENST00000394536 GGCTO75223 188 aaKnown RBP13.37□□□□□ -0.27
PCDH1-203ENST00000394536 PRB4P10163 310 aaPredicted RBP13.37□□□□□ -0.27
PCDH1-203ENST00000394536 LHFPL4Q7Z7J7 247 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 SAA2-SAA4A0A096LPE2 208 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 PLXNB1O43157 2135 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 SAA2P0DJI9 122 aaPredicted RBP13.37□□□□□ -0.27
PCDH1-203ENST00000394536 ACTL10Q5JWF8 245 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 KLHDC1Q8N7A1 406 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 YTHDF2Q9Y5A9 579 aaKnown RBP13.37□□□□□ -0.27
PCDH1-203ENST00000394536 MALRD1Q5VYJ5 2156 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 A6NNC1 897 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 IGLV2-14P01704 120 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 STAG3L2P0CL84 134 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 STAG3L3P0CL85 134 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 ERVK11-1P61568 191 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 DAZAP2Q15038 168 aaPredicted RBP13.37□□□□□ -0.27
PCDH1-203ENST00000394536 OR9G1Q8NH87 305 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 GOLT1BQ9Y3E0 138 aa13.37□□□□□ -0.27
PCDH1-203ENST00000394536 NPIPB3Q92617 1050 aa13.36□□□□□ -0.27
PCDH1-203ENST00000394536 ELOVL5Q9NYP7 299 aa13.36□□□□□ -0.27
PCDH1-203ENST00000394536 TBL2Q9Y4P3 447 aaKnown RBP13.36□□□□□ -0.27
PCDH1-203ENST00000394536 TNFRSF1AP19438 455 aa13.36□□□□□ -0.27
PCDH1-203ENST00000394536 PRB3Q04118 309 aaPredicted RBP13.36□□□□□ -0.27
PCDH1-203ENST00000394536 C10orf113Q5VZT2 155 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms