RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 REG1BP48304 166 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 VWC2Q2TAL6 325 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 PDLIM3Q53GG5 364 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 VMO1Q7Z5L0 202 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 OR4P4Q8NGL7 312 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 RXFP4Q8TDU9 374 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 RARRES2Q99969 163 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 BET1LQ9NYM9 111 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 RFNGQ9Y644 331 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 A0A087WWC5 75 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 C15orf61A6NNL5 157 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 OR13C7P0DN81 318 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 PAX2Q02962 417 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 VMA21Q3ZAQ7 101 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 MINOS1Q5TGZ0 78 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 CCDC144NLQ6NUI1 221 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 BIN3Q9NQY0 253 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 FOXA2Q9Y261 457 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 MINOS1-NBL1R4GNA1 71 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 BAHCC1Q9P281 2608 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 TOX4O94842 621 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 OR9G9P0C7N8 305 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 MAS1LP35410 378 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 LGALS4P56470 323 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 RAB5BP61020 215 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 RPS16P62249 146 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 RELBQ01201 579 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 TPTE2P1Q5T6R2 138 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 SLC35E3Q7Z769 313 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 MOB3BQ86TA1 216 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 LRRC75A-AS1Q8N1F1 130 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 RSG1Q9BU20 258 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 SIRPDQ9H106 197 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 ENY2Q9NPA8 101 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 ZNF257Q9Y2Q1 563 aa14.73□□□□□ -0.05
CCDC88C-203ENST00000389856 IGHV1-3A0A0C4DH29 117 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 PMS2P5A8MQ11 134 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 ODF3BA8MYP8 253 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 B4DEV8 164 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 IGKV1-16P04430 117 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 CRYBA1P05813 215 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 USF1P22415 310 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 HAGHQ16775 308 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 VKORC1L1Q8N0U8 176 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 RNF5Q99942 180 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 GGACTQ9BVM4 153 aa14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 QTRT1Q9BXR0 403 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 TBL2Q9Y4P3 447 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-203ENST00000389856 HELZ2Q9BYK8 2649 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 UBE2L5PA0A1B0GUS4 154 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 A0A1B0GV50 99 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 C17orf112F2Z3M2 114 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 LY6LH3BQJ8 138 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 UPK2O00526 184 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 BCL2P10415 239 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 OR2B8PP59922 312 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 CLEC12BQ2HXU8 276 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 RBMS3Q6XE24 437 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 HIST1H2BAQ96A08 127 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 RCC1LQ96I51 464 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 LPAR2Q9HBW0 351 aa14.71□□□□□ -0.05
CCDC88C-203ENST00000389856 IGHV4-61A0A0C4DH41 118 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 HSPE1P61604 102 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 OR8G2PQ6IF36 304 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 MALSU1Q96EH3 234 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 TVP23CQ96ET8 276 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 NIPSNAP3BQ9BS92 247 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 TMEM14BQ9NUH8 114 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 AKAP6Q13023 2319 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 IGHV4-30-2A0A087WSY4 118 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 CXorf65A6NEN9 183 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 C1orf196B1AJZ1 125 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 H3BQ15 152 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 MPDU1O75352 247 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 KBTBD11O94819 623 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 UBE2E1P51965 193 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 PNRC1Q12796 327 aaPredicted RBP14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 DIAPH2-AS1Q14236 149 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 ZNF709Q8N972 641 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 OR5B3Q8NH48 314 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 VAX2Q9UIW0 290 aa14.7□□□□□ -0.06
CCDC88C-203ENST00000389856 CTXND1A0A1B0GTU2 59 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 MAP1LC3B2A6NCE7 125 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 IL6RP08887 468 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 SAA1P0DJI8 122 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 HOXB4P17483 251 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 MDKP21741 143 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 CD1BP29016 333 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 HOXA1P49639 335 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 AKIRIN2Q53H80 203 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 MRPL41Q8IXM3 137 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 COMMD5Q9GZQ3 224 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 MAP1LC3BQ9GZQ8 125 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 HEYLQ9NQ87 328 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 SLC39A9Q9NUM3 307 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 OR51B2Q9Y5P1 312 aa14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 PUS1Q9Y606 427 aaKnown RBP eCLIP14.69□□□□□ -0.06
CCDC88C-203ENST00000389856 IFNA4P05014 189 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 COL8A1P27658 744 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 ATP5IP56385 69 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms