RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 GPR183P32249 361 aa11.33□□□□□ -0.6
RAPGEF1-201ENST00000372189 WDR25Q64LD2 544 aaPredicted RBP11.33□□□□□ -0.6
RAPGEF1-201ENST00000372189 OR52M1Q8NGK5 317 aa11.33□□□□□ -0.6
RAPGEF1-201ENST00000372189 FAM222BQ8WU58 562 aa11.33□□□□□ -0.6
RAPGEF1-201ENST00000372189 SH3BGRL3Q9H299 93 aa11.33□□□□□ -0.6
RAPGEF1-201ENST00000372189 LOC389332A0A1B0GUA5 103 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 NPIPB13A6NJU9 1138 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 NPIPB4C9JG80 1138 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 FCN3O75636 299 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 MGPP08493 103 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 SCTP09683 121 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 C1orf162Q8NEQ5 155 aaPredicted RBP11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 GPR146Q96CH1 333 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 WDYHV1Q96HA8 205 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 SOSTQ9BQB4 213 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 TRBV9A0A0B4J1U6 114 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 TMEM238C9JI98 176 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 KLF4O43474 513 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 RELBQ01201 579 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 MEIG1Q5JSS6 88 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 RBPMS2Q6ZRY4 209 aaKnown RBP11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 KIR2DL2P43627 348 aaPredicted RBP11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 GAGE1Q13065 139 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 SFTA2Q6UW10 78 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 PCM1Q15154 2024 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 A0A1B0GWJ7 208 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 TBR1Q16650 682 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 FBXL15Q9H469 300 aa11.32□□□□□ -0.6
RAPGEF1-201ENST00000372189 HOXA4Q00056 320 aaPredicted RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 SAXO1Q8IYX7 474 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 VKORC1L1Q8N0U8 176 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 B5MCH6 92 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 PRSS2P07478 247 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 HSPE1P61604 102 aaKnown RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 BSPH1Q075Z2 132 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 FLVCR1-AS1Q8TAF5 88 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 NXT2Q9NPJ8 142 aaKnown RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 GLRXP35754 106 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 LOXL3P58215 753 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 ZP1P60852 638 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 TBL2Q9Y4P3 447 aaKnown RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 ASCC3Q8N3C0 2202 aaKnown RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 NUP214P35658 2090 aaPredicted RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 PTPRFP10586 1907 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 TRBV20-1A0A075B6N2 111 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 TMSB15BA0A087X1C1 80 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 A8MXK9 166 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 SPATA25Q9BR10 227 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 AICDAQ9GZX7 198 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 IGHV3-72A0A0B4J1Y9 119 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 TRAV2A0A0B4J234 112 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 RAMP3O60896 148 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 TMEM187Q14656 261 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 PRSS8Q16651 343 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 NEU4Q8WWR8 484 aaPredicted RBP11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 CEP290O15078 2479 aa11.31□□□□□ -0.6
RAPGEF1-201ENST00000372189 IGKV3-7A0A075B6H7 116 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 DPRXA6NFQ7 191 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 KBTBD11O94819 623 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 FCGR2BP31994 310 aaPredicted RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 ORAOV1Q8WV07 137 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 RNASE6Q93091 150 aaKnown RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 CALYQ9NYX4 217 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 CEACAM18A8MTB9 384 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 QTRT1Q9BXR0 403 aaKnown RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 KLF12Q9Y4X4 402 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 PQLC2Q6ZP29 291 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 BRK1Q8WUW1 75 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 C14orf144Q96I85 54 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 RABAC1Q9UI14 185 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 ODAMA1E959 279 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 LINC00271P0C7V0 271 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 PRTN3P24158 256 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 ID1P41134 155 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 SELENOTP62341 195 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 LRRC75BQ2VPJ9 315 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 PCSK4Q6UW60 755 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 C9orf106Q8NAJ2 232 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 GTF3AQ92664 365 aaKnown RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 PRELID3AQ96N28 172 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 SPANXB1Q9NS25 103 aaPredicted RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 RBM3P98179 157 aaKnown RBP11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 SPANXN1Q5VSR9 72 aa11.3□□□□□ -0.6
RAPGEF1-201ENST00000372189 CECR9P0C854 216 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 UCP3P55916 312 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 OR4A5Q8NH83 315 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 MTCL1Q9Y4B5 1905 aaKnown RBP11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 CABIN1Q9Y6J0 2220 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 RAMP1O60894 148 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 EFNB1P98172 346 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 UNQ6494/PRO21346Q6UXR6 183 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 WFDC3Q8IUB2 231 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 LSM10Q969L4 123 aaKnown RBP11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 PLAUP00749 431 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 RPL27AP46776 148 aaKnown RBP11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 LAMTOR1Q6IAA8 161 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 FGFRL1Q8N441 504 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 TMEM126AQ9H061 195 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 ABHD12Q8N2K0 398 aa11.29□□□□□ -0.6
RAPGEF1-201ENST00000372189 SMIM8Q96KF7 97 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms