RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CRABP1P29762 137 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 PPP1CCP36873 323 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 SRP9P49458 86 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 TAS2R45P59539 299 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 LCN6P62502 163 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 RHOBP62745 196 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 KCNJ8Q15842 424 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 SCGB2B2Q4G0G5 96 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 C1orf194Q5T5A4 169 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MRPL2Q5T653 305 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 C9orf64Q5T6V5 341 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 SAMD13Q5VXD3 122 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 EBLN2Q6P2I7 272 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MORN3Q6PF18 240 aaPredicted RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 C16orf47Q6ZP98 133 aaPredicted RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 DAZ4Q86SG3 579 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 DHFR2Q86XF0 187 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 SLC22A24Q8N4F4 322 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 TMEM75Q8N9X5 138 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 OR10K1Q8NGX5 313 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 OR2T27Q8NH04 317 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 OR52N1Q8NH53 320 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 CMTM2Q8TAZ6 248 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MBD3L1Q8WWY6 194 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 RBPMSQ93062 196 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 MALSU1Q96EH3 234 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 REEP6Q96HR9 211 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 C18orf15Q96N68 181 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 TBX5Q99593 518 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 CCDC32Q9BV29 185 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 TMEM147Q9BVK8 224 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MAP1LC3BQ9GZQ8 125 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 C11orf49Q9H6J7 331 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 PLEKHF2Q9H8W4 249 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 TMEM138Q9NPI0 162 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 GPR84Q9NQS5 396 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 DAZ1Q9NQZ3 744 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 ACER3Q9NUN7 267 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 TAS2R1Q9NYW7 299 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 IDI2-AS1Q9NZ38 188 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MRPL27Q9P0M9 148 aaKnown RBP1.3□□□□□ -2.2
CD44-239ENST00000639002 LAMTOR3Q9UHA4 124 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 AK3Q9UIJ7 227 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ERGIC3Q9Y282 383 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 SLC35A3Q9Y2D2 325 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MYH3P11055 1940 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 LOXHD1Q8IVV2 1947 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 MYH2Q9UKX2 1941 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ERCC6Q03468 1493 aa1.3□□□□□ -2.2
CD44-239ENST00000639002 ZCCHC11Q5TAX3 1644 aaKnown RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 THSD7AQ9UPZ6 1657 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 SPG11Q96JI7 2443 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 KIF13BQ9NQT8 1826 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TRAV26-2A0A0B4J265 109 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 FAM236DA0A1B0GTK5 79 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 A0A1B0GW54 56 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TRAPPC13A5PLN9 417 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 J3QRK9 145 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 M0R381 172 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 UBE2L6O14933 153 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 FAM107AO95990 144 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 LTAP01374 205 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 IFNA7P01567 189 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 IGHG2P01859 326 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 IGHMP01871 453 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 OPN1SWP03999 348 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 ZNF705DP0CH99 300 aaPredicted RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 FAM236CP0DP71 79 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 PTHLHP12272 177 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 SPI1P17947 270 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 CNTFRP26992 372 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TPI1P60174 286 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 NCALDP61601 193 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 RHEBQ15382 184 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 MMDQ15546 238 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 CCDC153Q494R4 210 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TMEM128Q5BJH2 165 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 LYRM7Q5U5X0 104 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 LAIR2Q6ISS4 152 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 WDR59Q6PJI9 974 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TOMM20LQ6UXN7 152 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 TMEM136Q6ZRR5 245 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 EIF4E3Q8N5X7 224 aaKnown RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 OR8B12Q8NGG6 310 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 OR52L1Q8NGH7 329 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 OR13D1Q8NGV5 346 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 RNASE11Q8TAA1 199 aaKnown RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 GPR146Q96CH1 333 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 GNPNAT1Q96EK6 184 aaPredicted RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 RMND5BQ96G75 393 aaPredicted RBP1.29□□□□□ -2.2
CD44-239ENST00000639002 TM2D3Q9BRN9 247 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 C1QTNF6Q9BXI9 259 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 SH3BGRL3Q9H299 93 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 DUSP21Q9H596 190 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 CXorf21Q9HAI6 301 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 UQCC1Q9NVA1 299 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 ASF1BQ9NVP2 202 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 PRNDQ9UKY0 176 aa1.29□□□□□ -2.2
CD44-239ENST00000639002 ANAPC10Q9UM13 185 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms