RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ZNF134P52741 427 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 TEPPQ6URK8 271 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 SSMEM1Q8WWF3 244 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 ITGB1BP1O14713 200 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 NUPR1O60356 82 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 EFNB3Q15768 340 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 PLA2G2CQ5R387 149 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 C11orf52Q96A22 123 aa16.6■□□□□ 0.25
SYNGAP1-227ENST00000638142 ADMP35318 185 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 RAB7AP51149 207 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 TDGF1P3P51864 188 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 RAB31Q13636 194 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 MRPL52Q86TS9 123 aaKnown RBP16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 ZCCHC14Q8WYQ9 949 aaKnown RBP16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 OPN3Q9H1Y3 402 aaPredicted RBP16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 LY96Q9Y6Y9 160 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 URB1O60287 2271 aaKnown RBP16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 PRR33A8MZF0 331 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 NPY1RP25929 384 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 SELENOTP62341 195 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 ARSJQ5FYB0 599 aaPredicted RBP16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 STPG3Q8N7X2 389 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 LOXL4Q96JB6 756 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 PLSCR4Q9NRQ2 329 aa16.59■□□□□ 0.25
SYNGAP1-227ENST00000638142 A0A1B0GUS0 222 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 C9JCJ5 164 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 RPL29P47914 159 aaKnown RBP16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 RPL31P62899 125 aaKnown RBP16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 TCF23Q7RTU1 214 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 SLC24A4Q8NFF2 622 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 TMEM68Q96MH6 324 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 CALYQ9NYX4 217 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 IL36BQ9NZH7 164 aa16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 FOXA2Q9Y261 457 aaPredicted RBP16.58■□□□□ 0.25
SYNGAP1-227ENST00000638142 GCSAMQ8N6F7 178 aa16.58■□□□□ 0.24
SYNGAP1-227ENST00000638142 CMTM2Q8TAZ6 248 aa16.58■□□□□ 0.24
SYNGAP1-227ENST00000638142 UHRF2Q96PU4 802 aa16.58■□□□□ 0.24
SYNGAP1-227ENST00000638142 SEPSECSQ9HD40 501 aaKnown RBP16.58■□□□□ 0.24
SYNGAP1-227ENST00000638142 TET2Q6N021 2002 aaPredicted RBP16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 M0QZK8 103 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 SP9P0CG40 484 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF90Q03938 601 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 FAM169BQ8N8A8 192 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 SARAFQ96BY9 339 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 RAB9BQ9NP90 201 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 TMEM14BQ9NUH8 114 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 NCOR1O75376 2440 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 CACNA1GO43497 2377 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 GPR179Q6PRD1 2367 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 IGHV3-13P01766 116 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 IGHV3-7P01780 117 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 HSPE1P61604 102 aaKnown RBP16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 TBX15Q96SF7 602 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 NCOR1P1Q9H4R4 102 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 ENY2Q9NPA8 101 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 TMEM106BQ9NUM4 274 aa16.57■□□□□ 0.24
SYNGAP1-227ENST00000638142 TRGV10A0A0A0MS01 117 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 FNDC10F2Z333 226 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ESDP10768 282 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 HNF1AP20823 631 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 PAFAH1B2P68402 229 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNRF1Q8ND25 227 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ARL2-SNX15V9GYD0 113 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 IGHV3OR15-7A0A075B7D8 119 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF705FA8MVS1 300 aaPredicted RBP16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 A8MXE2 369 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 K7EN84 100 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF705DP0CH99 300 aaPredicted RBP16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF705BP0CI00 300 aaPredicted RBP16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 CGB3P0DN86 165 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 CGB7P0DN87 165 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 AREGP15514 252 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 SPATA31B1PQ5VZV4 182 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 OR4A47Q6IF82 309 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 CORO2AQ92828 525 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 SFXN3Q9BWM7 321 aa16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 ZNF71Q9NQZ8 489 aaPredicted RBP16.56■□□□□ 0.24
SYNGAP1-227ENST00000638142 BTF3P20290 206 aaKnown RBP16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 THBS3P49746 956 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 C1orf229Q6ZS94 237 aaPredicted RBP16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 C20orf144Q9BQM9 153 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 TPPP2P59282 170 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR20EP86478 221 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR20CP86479 221 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR20DP86480 221 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR20BP86481 221 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR20AP86496 221 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 BHLHA15Q7RTS1 189 aaPredicted RBP16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 PRR14LQ5THK1 2151 aa16.55■□□□□ 0.24
SYNGAP1-227ENST00000638142 WDFY4Q6ZS81 3184 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 CA2P00918 260 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 G0S2P27469 103 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 CASP6P55212 293 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 SLC25A10Q9UBX3 287 aaPredicted RBP16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 TP53TG3Q9ULZ0 132 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 PROCRQ9UNN8 238 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 SAA2-SAA4A0A096LPE2 208 aa16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 SAA2P0DJI9 122 aaPredicted RBP16.54■□□□□ 0.24
SYNGAP1-227ENST00000638142 C17orf58Q2M2W7 97 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 181 ms