RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OR5J2Q8NH18 312 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 XAGE1AQ9HD64 81 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 RSL24D1Q9UHA3 163 aaKnown RBP3.3□□□□□ -1.88
NUP54-215ENST00000514313 HHLA3Q9XRX5 114 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 PRELID3BQ9Y3B1 194 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 NOTCH2Q04721 2471 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 MTUS2Q5JR59 1369 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 DHX57Q6P158 1386 aaKnown RBP3.29□□□□□ -1.88
NUP54-215ENST00000514313 A0A0J9YW62 118 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 ZNF878C9JN71 531 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 H3BT86 120 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 FADS1O60427 444 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 HINT1P49773 126 aaPredicted RBP3.29□□□□□ -1.88
NUP54-215ENST00000514313 EDDM3AQ14507 147 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 PABPC1L2AQ5JQF8 200 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 DGCR14Q96DF8 476 aaKnown RBP3.29□□□□□ -1.88
NUP54-215ENST00000514313 WDR61Q9GZS3 305 aaKnown RBP3.29□□□□□ -1.88
NUP54-215ENST00000514313 DCSTAMPQ9H295 470 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 EFCAB1Q9HAE3 211 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 GLTPQ9NZD2 209 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 MYO9BQ13459 2157 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 REREQ9P2R6 1566 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 SCN9AQ15858 1988 aa3.29□□□□□ -1.88
NUP54-215ENST00000514313 SLX4Q8IY92 1834 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 OR4C46A6NHA9 309 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 CNIH1O95406 144 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 DEFA1P59665 94 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 RPS20P60866 119 aaKnown RBP3.28□□□□□ -1.88
NUP54-215ENST00000514313 ZNF90Q03938 601 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 ANKRD29Q8N6D5 301 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 PSTPIP2Q9H939 334 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 PRO2289Q9P1D8 64 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 FBXO5Q9UKT4 447 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 FUT9Q9Y231 359 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 ADGRB3O60242 1522 aa3.28□□□□□ -1.88
NUP54-215ENST00000514313 A0A0G2JQZ4 141 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 RFPL4AA6NLU0 287 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 RFPL4AL1F8VTS6 287 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 CREBL2O60519 120 aaPredicted RBP3.27□□□□□ -1.89
NUP54-215ENST00000514313 HLA-DMBP28068 263 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 HSD11B1P28845 292 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 RPL28P46779 137 aaKnown RBP3.27□□□□□ -1.89
NUP54-215ENST00000514313 RUNX1Q01196 453 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 AKIRIN2Q53H80 203 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 Q6ZS49 121 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 OR5B17Q8NGF7 314 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 KLF6Q99612 283 aaPredicted RBP3.27□□□□□ -1.89
NUP54-215ENST00000514313 NAT8Q9UHE5 227 aa3.27□□□□□ -1.89
NUP54-215ENST00000514313 TRAV41A0A0B4J266 112 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 FAM236DA0A1B0GTK5 79 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 LY6LH3BQJ8 138 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 KLRC4O43908 158 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 P0DMU3 169 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 FAM231AP0DMU4 169 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 FAM231CP0DMU5 169 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 FAM236CP0DP71 79 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 TPI1P60174 286 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 RAB14P61106 215 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 MRPS25P82663 173 aaKnown RBP3.26□□□□□ -1.89
NUP54-215ENST00000514313 SPA17Q15506 151 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 ZNF705AQ6ZN79 300 aaPredicted RBP3.26□□□□□ -1.89
NUP54-215ENST00000514313 ACOT12Q8WYK0 555 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 TTTY12Q9BZ98 90 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 OR8D2Q9GZM6 311 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 PRTFDC1Q9NRG1 225 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 IL36BQ9NZH7 164 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 TIMM22Q9Y584 194 aa3.26□□□□□ -1.89
NUP54-215ENST00000514313 HAND1O96004 215 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 PRM2P04554 102 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 LGALS1P09382 135 aaKnown RBP3.25□□□□□ -1.89
NUP54-215ENST00000514313 DEFA4P12838 97 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 PEBP1P30086 187 aaKnown RBP3.25□□□□□ -1.89
NUP54-215ENST00000514313 CDK10Q15131 360 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 TMEM97Q5BJF2 176 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 LYZL1Q6UWQ5 148 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 KRTAP13-1Q8IUC0 172 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 OR8B12Q8NGG6 310 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 MRPL30Q8TCC3 161 aaKnown RBP3.25□□□□□ -1.89
NUP54-215ENST00000514313 TLNRD1Q9H1K6 362 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 CXCL16Q9H2A7 254 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 TIMM9Q9Y5J7 89 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 ITGB4P16144 1822 aa3.25□□□□□ -1.89
NUP54-215ENST00000514313 GGT3PA6NGU5 568 aa3.24□□□□□ -1.89
NUP54-215ENST00000514313 CAPZBP47756 277 aa3.24□□□□□ -1.89
NUP54-215ENST00000514313 CCL20P78556 96 aa3.24□□□□□ -1.89
NUP54-215ENST00000514313 BASP1P80723 227 aaKnown RBP3.24□□□□□ -1.89
NUP54-215ENST00000514313 ZNF791Q3KP31 576 aaPredicted RBP3.24□□□□□ -1.89
NUP54-215ENST00000514313 FBXL12Q9NXK8 326 aa3.24□□□□□ -1.89
NUP54-215ENST00000514313 DOK5Q9P104 306 aa3.24□□□□□ -1.89
NUP54-215ENST00000514313 IGHV3-64A0A075B6Q5 118 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 TRAV7A0A075B6U4 112 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 TMSB15BA0A087X1C1 80 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 TRAV26-2A0A0B4J265 109 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 PSMB8P28062 276 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 RPL18Q07020 188 aaKnown RBP3.23□□□□□ -1.89
NUP54-215ENST00000514313 BORCS7Q96B45 105 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 TSPAN32Q96QS1 320 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 NIPSNAP1Q9BPW8 284 aa3.23□□□□□ -1.89
NUP54-215ENST00000514313 TRIM4Q9C037 500 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms