RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 KLRF1Q9NZS2 232 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 GON4LQ3T8J9 2241 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 C15orf62A8K5M9 175 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 RHBDL1O75783 438 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 HIST1H1EP10412 219 aaKnown RBP11.5□□□□□ -0.57
HDAC1-206ENST00000476391 G6PCP35575 357 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 CKS1BP61024 79 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 RPL8P62917 257 aaKnown RBP11.5□□□□□ -0.57
HDAC1-206ENST00000476391 TCTEX1D4Q5JR98 221 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 TMEM92Q6UXU6 159 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 C16orf47Q6ZP98 133 aaPredicted RBP11.5□□□□□ -0.57
HDAC1-206ENST00000476391 SHISA6Q6ZSJ9 500 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 OR4A5Q8NH83 315 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 VSTM2AQ8TAG5 236 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 CT55Q8WUE5 264 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 CHCHD1Q96BP2 118 aaKnown RBP11.5□□□□□ -0.57
HDAC1-206ENST00000476391 HS3ST6Q96QI5 342 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 RNF186Q9NXI6 227 aa11.5□□□□□ -0.57
HDAC1-206ENST00000476391 LTBP2Q14767 1821 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 A0A0G2JLM5 398 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 H3BUT2 72 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 F2RL2O00254 374 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 WISP2O76076 250 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 LEPROTL1O95214 131 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 LINC00271P0C7V0 271 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 CRYBA4P53673 196 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 RUNX3Q13761 415 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 CD300EQ496F6 205 aaPredicted RBP11.49□□□□□ -0.57
HDAC1-206ENST00000476391 GGTLC1Q9BX51 225 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 PRDM6Q9NQX0 595 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 TRAV26-1A0A087WT03 109 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 CELA2BP08218 269 aaPredicted RBP11.49□□□□□ -0.57
HDAC1-206ENST00000476391 TREML4Q6UXN2 200 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 MKXQ8IYA7 352 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 URB1-AS1Q96HZ7 61 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 OR2V2Q96R30 315 aa11.49□□□□□ -0.57
HDAC1-206ENST00000476391 APOA2P02652 100 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 OR5AL1P0C617 328 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 TM4SF4P48230 202 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 C7orf61Q8IZ16 206 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 TMEM251Q8N6I4 163 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 ZBTB34Q8NCN2 500 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 FAM222BQ8WU58 562 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 VWCEQ96DN2 955 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 SERTAD4Q9NUC0 356 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 C21orf140B9A014 251 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 FTH1P19P0C7X4 201 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 MIC13Q5XKP0 118 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 Q6ZSR6 202 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 MOB1BQ7L9L4 216 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 MGST2Q99735 147 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 MAP1LC3CQ9BXW4 147 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 SPCS1Q9Y6A9 102 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 PCDH15Q96QU1 1955 aa11.48□□□□□ -0.57
HDAC1-206ENST00000476391 GAGE12HA6NDE8 117 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 NPIPA3F8WFD2 350 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 MGST1P10620 155 aaKnown RBP11.47□□□□□ -0.57
HDAC1-206ENST00000476391 MFAP2P55001 183 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 TMPRSS3P57727 454 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 EFNB3Q15768 340 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 H1FXQ92522 213 aaKnown RBP11.47□□□□□ -0.57
HDAC1-206ENST00000476391 TRIB1Q96RU8 372 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 CHRNA10Q9GZZ6 450 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 THYN1Q9P016 225 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 COLQQ9Y215 455 aaPredicted RBP11.47□□□□□ -0.57
HDAC1-206ENST00000476391 DIDO1Q9BTC0 2240 aaKnown RBP11.47□□□□□ -0.57
HDAC1-206ENST00000476391 IGHV1-24A0A0C4DH33 117 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 IGLV2-8P01709 118 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 CA3P07451 260 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 MTURNQ8N3F0 131 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 STXBP6Q8NFX7 210 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 MBD6Q96DN6 1003 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 ZNF407Q9C0G0 2248 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 UNC80Q8N2C7 3258 aa11.47□□□□□ -0.57
HDAC1-206ENST00000476391 MED12LQ86YW9 2145 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.46□□□□□ -0.57
HDAC1-206ENST00000476391 TEX48A0A1B0GUV7 120 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 A0A1W2PPM0 123 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 PPOXP50336 477 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 NOGQ13253 232 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 GDF5OSQ5U4N7 250 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 ZNF837Q96EG3 531 aaPredicted RBP11.46□□□□□ -0.57
HDAC1-206ENST00000476391 PHF7Q9BWX1 381 aaPredicted RBP11.46□□□□□ -0.57
HDAC1-206ENST00000476391 TMEM167BQ9NRX6 74 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 KCNIP1Q9NZI2 227 aa11.46□□□□□ -0.57
HDAC1-206ENST00000476391 TRAV24A0A0B4J272 114 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 J3QR89 54 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 LIPFP07098 398 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 ZNF32P17041 273 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 FBLP22087 321 aaKnown RBP11.46□□□□□ -0.58
HDAC1-206ENST00000476391 RPL24P83731 157 aaKnown RBP11.46□□□□□ -0.58
HDAC1-206ENST00000476391 FA2HQ7L5A8 372 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 ATP5L2Q7Z4Y8 100 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 ZNF645Q8N7E2 425 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 GRAMD2BQ96HH9 432 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 SPATA25Q9BR10 227 aa11.46□□□□□ -0.58
HDAC1-206ENST00000476391 IGHV5-51A0A0C4DH38 117 aa11.45□□□□□ -0.58
HDAC1-206ENST00000476391 ZIC3O60481 467 aa11.45□□□□□ -0.58
HDAC1-206ENST00000476391 RBMXL2O75526 392 aaKnown RBP11.45□□□□□ -0.58
HDAC1-206ENST00000476391 NEURL1O76050 574 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms