RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C21orf62-AS1Q17RA5 79 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 C19orf35Q6ZS72 473 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 OR5A2Q8NGI9 324 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 CORO2AQ92828 525 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 VSIRQ9H7M9 311 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 MPC1Q9Y5U8 109 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 LOC102724200A0A096LPH7 203 aaPredicted RBP4.46□□□□□ -1.69
SYNE1-220ENST00000471834 OR5B21A6NL26 309 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 ZIC3O60481 467 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 ZG16O60844 167 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 CRYGCP07315 174 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 RPEL1Q2QD12 228 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 SFTPA2Q8IWL1 248 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 DCTN5Q9BTE1 182 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 MLST8Q9BVC4 326 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 PRSS22Q9GZN4 317 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 OR2D2Q9H210 308 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 PRO1933Q9H354 126 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 ISLRO14498 428 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 PDE6DO43924 150 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 LYZL6O75951 148 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 FSTL3O95633 263 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 SRD5A2P31213 254 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 BPIFB3P59826 476 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 PSG4Q00888 419 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 Q1RN00 199 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 OR10J3Q5JRS4 329 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 FAM120AOSQ5T036 256 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 C1orf162Q8NEQ5 155 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-220ENST00000471834 SNX22Q96L94 193 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 KCNIP2Q9NS61 270 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 CST7O76096 145 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 GYPAP02724 150 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 STUMQ69YW2 141 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 GGNQ86UU5 652 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 OR2Y1Q8NGV0 311 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 SGMS2Q8NHU3 365 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 DKK4Q9UBT3 224 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 V9GYV3 84 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 CHST1O43916 411 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 SLC25A5P05141 298 aaKnown RBP4.46□□□□□ -1.7
SYNE1-220ENST00000471834 OR3A1P47881 315 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 SSX8Q7RTT4 187 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 URB1-AS1Q96HZ7 61 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 EAF1Q96JC9 268 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-220ENST00000471834 F2RL2O00254 374 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF737O75373 536 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 TNFRSF1AP19438 455 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 PPP1CBP62140 327 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 CEACAM21Q3KPI0 293 aa4.46□□□□□ -1.7
SYNE1-220ENST00000471834 TRAV24A0A0B4J272 114 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 FCGR3BO75015 233 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 PSMG4Q5JS54 123 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR5AU1Q8NGC0 362 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR1F12Q8NHA8 337 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TRAV30A0A087WSZ9 112 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 XKRY2A2RUG3 117 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 BMPR1BO00238 502 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 NPSP0C0P6 89 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 PATE4P0C8F1 98 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 FAM71F2Q6NXP2 309 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR4C5Q8NGB2 326 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR1L6Q8NGR2 347 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 IGHG4P01861 327 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 OR4A8P0C604 315 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 CEACAM8P31997 349 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 NHLH1Q02575 133 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 PAX8Q06710 450 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 PCOLCEQ15113 449 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 RHOVQ96L33 236 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 RPP25Q9BUL9 199 aaKnown RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM147Q9BVK8 224 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 KIF26BQ2KJY2 2108 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 LOC389332A0A1B0GUA5 103 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 RAB29O14966 203 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 SNCGO76070 127 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 GPR6P46095 362 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 KRTCAP3Q53RY4 240 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 COL5A1-AS1Q5SY13 56 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM92Q6UXU6 159 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 PERPQ96FX8 193 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 SMIM7Q9BQ49 75 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 NDFIP1Q9BT67 221 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 C19orf24Q9BVV8 132 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 POLDIP2Q9Y2S7 368 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 RFNGQ9Y644 331 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 CHD7Q9P2D1 2997 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 LRRC3CA6NJW4 275 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 C15orf62A8K5M9 175 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 KLF7O75840 302 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TPPP2P59282 170 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 GUSBP1Q15486 140 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TBC1D26Q86UD7 250 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 SLC25A22Q9H936 323 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 TRGV5A0A0B4J1U4 118 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 IGHV3-21A0A0B4J1V1 117 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 LY6G6EA0A0G2JKS1 128 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 A0A1W2PRE2 83 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 IGLC7A0M8Q6 106 aa4.45□□□□□ -1.7
SYNE1-220ENST00000471834 J3QT63 122 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms