RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PDE6DO43924 150 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 CD3EP07766 207 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 TRGC1P0CF51 173 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 ARL14EPLP0DKL9 152 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 CHRNB4P30926 498 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 Q8WTZ3 238 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 ZDHHC8Q9ULC8 765 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 CNN1P51911 297 aaKnown RBP9.72□□□□□ -0.85
NPHP4-204ENST00000460696 SRSF7Q16629 238 aaKnown RBP eCLIP9.72□□□□□ -0.85
NPHP4-204ENST00000460696 GCSAMQ8N6F7 178 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 FGF23Q9GZV9 251 aaPredicted RBP9.72□□□□□ -0.85
NPHP4-204ENST00000460696 PPIHO43447 177 aaKnown RBP9.71□□□□□ -0.85
NPHP4-204ENST00000460696 SLC35B1P78383 322 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 ARL16Q0P5N6 197 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 KRTCAP3Q53RY4 240 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 ARSJQ5FYB0 599 aaPredicted RBP9.71□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF383Q8NA42 475 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 ANAPC16Q96DE5 110 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF714Q96N38 554 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 MS4A5Q9H3V2 200 aa9.71□□□□□ -0.85
NPHP4-204ENST00000460696 TECRQ9NZ01 308 aaKnown RBP9.71□□□□□ -0.85
NPHP4-204ENST00000460696 MALRD1Q5VYJ5 2156 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 KBTBD11O94819 623 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 PLAUP00749 431 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 COX6B1P14854 86 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 DBX2Q6ZNG2 339 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 OR1L8Q8NGR8 309 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 OR5B3Q8NH48 314 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 RBP4P02753 201 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 GCSAMLQ5JQS6 135 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 Q6ZS49 121 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 WDR86Q86TI4 376 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 VSTM2AQ8TAG5 236 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 STARD4Q96DR4 205 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 IDI2-AS1Q9NZ38 188 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 ZNF292O60281 2723 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 ARHGAP21Q5T5U3 1957 aa9.71□□□□□ -0.86
NPHP4-204ENST00000460696 HIVEP2P31629 2446 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 FAM157AC9JC47 383 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 MPDU1O75352 247 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 CD40P25942 277 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 OR51G1Q8NGK1 321 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 GATAD1Q8WUU5 269 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 COQ2Q96H96 371 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 CLCF1Q9UBD9 225 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 HELTA6NFD8 242 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 CLN5O75503 358 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 COL8A1P27658 744 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 ZNF585BQ52M93 769 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 HCP5Q6MZN7 132 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 PITPNC1Q9UKF7 332 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 SCGB2A1O75556 95 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 MORN2Q502X0 79 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 OR1B1Q8NGR6 318 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 OR4X1Q8NH49 305 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 MRPL37Q9BZE1 423 aaKnown RBP9.7□□□□□ -0.86
NPHP4-204ENST00000460696 TMEM167BQ9NRX6 74 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 INSIG2Q9Y5U4 225 aa9.7□□□□□ -0.86
NPHP4-204ENST00000460696 CXorf65A6NEN9 183 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 CA2P00918 260 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 KRTDAPP60985 99 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 RPP25LQ8N5L8 163 aaKnown RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 ZNF439Q8NDP4 499 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 SFXN3Q9BWM7 321 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 ACANP16112 2415 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 ELOA3CA0A087WX78 387 aaPredicted RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 SLC25A5P05141 298 aaKnown RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 OR9G9P0C7N8 305 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 ATP5G3P48201 142 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 CD177Q8N6Q3 437 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 KDF1Q8NAX2 398 aaPredicted RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 BORCS7Q96B45 105 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 WFIKKN1Q96NZ8 548 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 MS4A10Q96PG2 267 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 TUBA4BQ9H853 241 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 LINC00473A8K010 186 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 H0Y8G0 127 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 SLC25A17O43808 307 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 PMCHP20382 165 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 DUTP33316 252 aaKnown RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 MRPL54Q6P161 138 aaKnown RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 SPNS3Q6ZMD2 512 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 SIGLECL1Q8N7X8 197 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 METTL1Q9UBP6 276 aaKnown RBP9.69□□□□□ -0.86
NPHP4-204ENST00000460696 HSPB7Q9UBY9 170 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 NUP210LQ5VU65 1888 aa9.69□□□□□ -0.86
NPHP4-204ENST00000460696 TRBV23-1A0A0A0MS06 115 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 TRBV6-6A0A0A6YYG2 114 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 A0A1W2PN81 502 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 NCBP2LA6PVI3 153 aaKnown RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 TMEM250H0YL14 139 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 GATA2P23769 480 aaPredicted RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 IER3P46695 156 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 PRB3Q04118 309 aaPredicted RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 OR4A47Q6IF82 309 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 WDR31Q8NA23 367 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 SDF2L1Q9HCN8 221 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 PLSCR4Q9NRQ2 329 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 ACAA1P09110 424 aaPredicted RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 CCL3L1P16619 93 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms