RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 USF1P22415 310 aaPredicted RBP10.81□□□□□ -0.68
HMGB1-202ENST00000339872 F2RL1P55085 397 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 RPL8P62917 257 aaKnown RBP10.81□□□□□ -0.68
HMGB1-202ENST00000339872 PRCDQ00LT1 54 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 PAX2Q02962 417 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 ATP6V1FQ16864 119 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 VMA21Q3ZAQ7 101 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 LDLRAD2Q5SZI1 272 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 SP5Q6BEB4 398 aaPredicted RBP10.81□□□□□ -0.68
HMGB1-202ENST00000339872 HCP5Q6MZN7 132 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 WDR61Q9GZS3 305 aaKnown RBP10.81□□□□□ -0.68
HMGB1-202ENST00000339872 UQCC1Q9NVA1 299 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 FBXO7Q9Y3I1 522 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 KPTNQ9Y664 436 aa10.81□□□□□ -0.68
HMGB1-202ENST00000339872 SLC25A17O43808 307 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TPTE2P1Q5T6R2 138 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 C1orf122Q6ZSJ8 110 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 SLC24A4Q8NFF2 622 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 OR5B3Q8NH48 314 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TMEM167AQ8TBQ9 72 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 NRGNQ92686 78 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 COMMD5Q9GZQ3 224 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TACC2O95359 2948 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 A0A1W2PPI3 338 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 ODF3BA8MYP8 253 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 UMAD1C9J7I0 102 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TRIM77I1YAP6 450 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 SCAF4O95104 1147 aaKnown RBP10.8□□□□□ -0.68
HMGB1-202ENST00000339872 HNF4GQ14541 408 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 AKR1C8PQ5T2L2 129 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 CLEC2AQ6UVW9 174 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 BTNL8Q6UX41 500 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 ETV3LQ6ZN32 361 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 OR4A5Q8NH83 315 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TAF15Q92804 592 aaKnown RBP eCLIP10.8□□□□□ -0.68
HMGB1-202ENST00000339872 PARD6GQ9BYG4 376 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-202ENST00000339872 DPM3Q9P2X0 92 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 HILPDAQ9Y5L2 63 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 TNCP24821 2201 aa10.8□□□□□ -0.68
HMGB1-202ENST00000339872 UTP20O75691 2785 aaKnown RBP10.79□□□□□ -0.68
HMGB1-202ENST00000339872 RAB19A4D1S5 217 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 HOXB4P17483 251 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-202ENST00000339872 NPY1RP25929 384 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 CEACAM3P40198 252 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 LGALS7P47929 136 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 RAB11AP62491 216 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 IL34Q6ZMJ4 242 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 LHFPL4Q7Z7J7 247 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 C10orf105Q8TEF2 133 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 TMEM170AQ8WVE7 144 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 PERPQ96FX8 193 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 LINC00052Q96N35 136 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 SIRPDQ9H106 197 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 LPAR2Q9HBW0 351 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 TPSG1Q9NRR2 321 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 NUDT19A8MXV4 375 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 RNASEK-C17orf49H0YIS7 233 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 AGPAT2O15120 278 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 IFNA4P05014 189 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 CNTFRP26992 372 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 PJVKQ0ZLH3 352 aa10.79□□□□□ -0.68
HMGB1-202ENST00000339872 ZNF430Q9H8G1 570 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-202ENST00000339872 UNKLQ9H9P5 680 aaKnown RBP10.79□□□□□ -0.68
HMGB1-202ENST00000339872 NDUFS8O00217 210 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 TIMM23O14925 209 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 FOXH1O75593 365 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 TOX4O94842 621 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 TSPAN15O95858 294 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 CA2P00918 260 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 ZP3P21754 424 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 FGF7P21781 194 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 VWC2Q2TAL6 325 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 PSMG3Q9BT73 122 aaPredicted RBP10.78□□□□□ -0.68
HMGB1-202ENST00000339872 FAM157AC9JC47 383 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 PAX6P26367 422 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 AKR1C1Q04828 323 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 C10orf55Q5SWW7 151 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 OR10W1Q8NGF6 305 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 OR1L8Q8NGR8 309 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 LYPD6BQ8NI32 183 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 NARS2Q96I59 477 aaKnown RBP10.78□□□□□ -0.68
HMGB1-202ENST00000339872 NDUFA4L2Q9NRX3 87 aa10.78□□□□□ -0.68
HMGB1-202ENST00000339872 IGHV4-61A0A0C4DH41 118 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 A0A1B0GV50 99 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 SMCO3A2RU48 225 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 PRSS46E5RG02 174 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 UQCC3Q6UW78 93 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 BPIFCQ8NFQ6 507 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 FAM208BQ5VWN6 2430 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 WNK2Q9Y3S1 2297 aa10.77□□□□□ -0.69
HMGB1-202ENST00000339872 IGHV4-30-2A0A087WSY4 118 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 KRBOX1C9JBD0 128 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 E7EUB6 86 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 CD1BP29016 333 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 DVL1P1P54792 670 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-202ENST00000339872 ELLP55199 621 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-202ENST00000339872 SRSF3P84103 164 aaKnown RBP10.76□□□□□ -0.69
HMGB1-202ENST00000339872 TEX45Q8NA69 505 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 TMEM231Q9H6L2 316 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 ASH1LQ9NR48 2969 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms