RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FXYD4P59646 89 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 ID3Q02535 119 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 DCAF12Q5T6F0 453 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 EBLN2Q6P2I7 272 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 RNF144BQ7Z419 303 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 ZNF439Q8NDP4 499 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 OR52N5Q8NH56 324 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 SAP25Q8TEE9 199 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 C19orf24Q9BVV8 132 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 C12orf49Q9H741 205 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 NAT8BQ9UHF3 227 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 ANXA10Q9UJ72 324 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 SPCS1Q9Y6A9 102 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 ARL2-SNX15V9GYD0 113 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 RTTNQ86VV8 2226 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 A0A1W2PNR3 127 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 PAGE4O60829 102 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 CCL4P13236 92 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 USF1P22415 310 aaPredicted RBP8.61□□□□□ -1.03
VPS39-214ENST00000614932 OR3A4PP47883 348 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 FABP6P51161 128 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 PAX9P55771 341 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 PLCXD3Q63HM9 321 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 RPP25LQ8N5L8 163 aaKnown RBP8.61□□□□□ -1.03
VPS39-214ENST00000614932 RNF183Q96D59 192 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 CHRNA10Q9GZZ6 450 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 ERG28Q9UKR5 140 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 TMEM265A0A087WTH1 108 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 A0A0G2JLM5 398 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 PRSS37A4D1T9 235 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 OR4C46A6NHA9 309 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 RPL27P61353 136 aaKnown RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 RPL32P62910 135 aaKnown RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 DMRTC1Q5HYR2 192 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 CARD17Q5XLA6 110 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 DOLPP1Q86YN1 238 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 ZNF441Q8N8Z8 693 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 HARBI1Q96MB7 349 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 GPR82Q96P67 336 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 QTRT1Q9BXR0 403 aaKnown RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 YAE1D1Q9NRH1 226 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 NECAP2Q9NVZ3 263 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 LOC101059948A0A1B0GTJ6 334 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 C11orf94C9JXX5 98 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 ADAM20O43506 726 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 IGFBP2P18065 325 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 ID1P41134 155 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 LRRC75BQ2VPJ9 315 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 UEVLDQ8IX04 471 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 SMIM20Q8N5G0 67 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 ZNF114Q8NC26 417 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 MBD6Q96DN6 1003 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 CENPMQ9NSP4 180 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 IL36GQ9NZH8 169 aa8.6□□□□□ -1.03
VPS39-214ENST00000614932 MCTS1Q9ULC4 181 aaKnown RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 PTRH2Q9Y3E5 179 aaKnown RBP8.6□□□□□ -1.03
VPS39-214ENST00000614932 CTXND1A0A1B0GTU2 59 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 A6NDN8 102 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 ZNF850A8MQ14 1090 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 FOXI3A8MTJ6 420 aaPredicted RBP8.59□□□□□ -1.03
VPS39-214ENST00000614932 HMGB3O15347 200 aaKnown RBP8.59□□□□□ -1.03
VPS39-214ENST00000614932 HTR1DP28221 377 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 REG1BP48304 166 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 GNG4P50150 75 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 NRN1LQ496H8 165 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 ZNF695Q8IW36 515 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 NFAM1Q8NET5 270 aaPredicted RBP8.59□□□□□ -1.03
VPS39-214ENST00000614932 C18orf32Q8TCD1 76 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 PHF3Q92576 2039 aaKnown RBP8.59□□□□□ -1.03
VPS39-214ENST00000614932 RAB1CQ92928 201 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 FAM206AQ9NX38 181 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 C3orf85A0A1B0GTC6 90 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 PGPEP1LA6NFU8 196 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 C2orf70A6NJV1 201 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 TNFRSF13BO14836 293 aaPredicted RBP8.59□□□□□ -1.03
VPS39-214ENST00000614932 EFNA2O43921 213 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 FRMD6-AS1P0C7T7 363 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 SRIP30626 198 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 OTX2P32243 289 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 GNB1P62873 340 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 SGCBQ16585 318 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 COX19Q49B96 90 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 TMEM97Q5BJF2 176 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 PMS2CLQ68D20 193 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 DEFB123Q8N688 67 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 SCRT2Q9NQ03 307 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 SERTAD4Q9NUC0 356 aa8.59□□□□□ -1.03
VPS39-214ENST00000614932 MS4A18H0YCH9 400 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 MS4A18Q3C1V0 323 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 LHFPL2Q6ZUX7 228 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 ZNF525Q8N782 197 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 OR10X1Q8NGY0 326 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 TMEM222Q9H0R3 208 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 MS4A5Q9H3V2 200 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 WDR54Q9H977 334 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 HES4Q9HCC6 221 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 GP6Q9HCN6 339 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 UFC1Q9Y3C8 167 aa8.58□□□□□ -1.04
VPS39-214ENST00000614932 RALGAPA1Q6GYQ0 2036 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms