RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 HMG20AQ9NP66 347 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 ENY2Q9NPA8 101 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 LHX9Q9NQ69 397 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 FAIMQ9NVQ4 179 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 DNAJC27Q9NZQ0 273 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 CARHSP1Q9Y2V2 147 aaKnown RBP3.13□□□□□ -1.91
NUP88-213ENST00000576862 AP4S1Q9Y587 144 aa3.13□□□□□ -1.91
NUP88-213ENST00000576862 KIF26AQ9ULI4 1882 aaPredicted RBP3.13□□□□□ -1.91
NUP88-213ENST00000576862 BPTFQ12830 3046 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 A0A096LPI6 279 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 SPTY2D1-AS1A0A0U1RR47 76 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 DHRS12A0PJE2 317 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 NCBP2LA6PVI3 153 aaKnown RBP3.12□□□□□ -1.91
NUP88-213ENST00000576862 GCM2O75603 506 aaPredicted RBP3.12□□□□□ -1.91
NUP88-213ENST00000576862 UPK1BO75841 260 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 TSPAN19P0C672 248 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 CD79AP11912 226 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 GGT1P19440 569 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 PAX6P26367 422 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 PFN2P35080 140 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 MAP2K4P45985 399 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 SERPINB10P48595 397 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 AQP4P55087 323 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 TAS2R43P59537 309 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 HSPE1P61604 102 aaKnown RBP3.12□□□□□ -1.91
NUP88-213ENST00000576862 SLC35A1P78382 337 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 PRDX1Q06830 199 aaKnown RBP3.12□□□□□ -1.91
NUP88-213ENST00000576862 C16orf72Q14CZ0 275 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 GRK1Q15835 563 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 SAMD13Q5VXD3 122 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 CALHM3Q86XJ0 350 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 DOLPP1Q86YN1 238 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 DEFB119Q8N690 84 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 COX18Q8N8Q8 333 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 OR4E2Q8NGC2 313 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 OR2K2Q8NGT1 345 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 OR10R2Q8NGX6 335 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 OR6N1Q8NGY5 312 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 CANT1Q8WVQ1 401 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 LCN9Q8WX39 176 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 PATE1Q8WXA2 126 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 ARPC1AQ92747 370 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 GHSRQ92847 366 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 DNAJC30Q96LL9 226 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 COL21A1Q96P44 957 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 VPS25Q9BRG1 176 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 SELENOIQ9C0D9 397 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 FBXL15Q9H469 300 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 COPZ2Q9P299 210 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 HEBP2Q9Y5Z4 205 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 HELZP42694 1942 aaKnown RBP3.12□□□□□ -1.91
NUP88-213ENST00000576862 UNC80Q8N2C7 3258 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 DOCK8Q8NF50 2099 aa3.12□□□□□ -1.91
NUP88-213ENST00000576862 NUP210Q8TEM1 1887 aaPredicted RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 ATG2AQ2TAZ0 1938 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 MTCL1Q9Y4B5 1905 aaKnown RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 COL4A2P08572 1712 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 BORCS7-ASMTA0A0B4J1R7 106 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 A0A0G2JLM5 398 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 A0A0G2JN53 185 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 IGHV3-64DA0A0J9YX35 117 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 TEX50A0A1B0GTY4 177 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 A0A1B0GV50 99 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 MAP1LC3B2A6NCE7 125 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 CCDC160A6NGH7 325 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 CYB5BO43169 146 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 TNFSF15O95150 251 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 CPSF4O95639 269 aaKnown RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 C6orf47O95873 294 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 TNFP01375 233 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 TTRP02766 147 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 METTL15P1P0C7V9 234 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 CHTF8P0CG12 524 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 GABRA1P14867 456 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 ATF1P18846 271 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 SLC2A5P22732 501 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 TSPOP30536 169 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 KLF3P57682 345 aaPredicted RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 CKS1BP61024 79 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 PPP1CAP62136 330 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 SELENOTP62341 195 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 RPS28P62857 69 aaKnown RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 HBA1P69905 142 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 ZNF92Q03936 586 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 RELAQ04206 551 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 QPRTQ15274 297 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 LAMTOR1Q6IAA8 161 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 GLYATQ6IB77 296 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 HAGHLQ6PII5 290 aaPredicted RBP3.11□□□□□ -1.91
NUP88-213ENST00000576862 VN1R4Q7Z5H5 301 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 OAFQ86UD1 273 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 ARRDC1Q8N5I2 433 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 DEFB123Q8N688 67 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 OR4D11Q8NGI4 311 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 OR4P4Q8NGL7 312 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 OR5J2Q8NH18 312 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 OR10G6Q8NH81 332 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 SLC37A2Q8TED4 501 aa3.11□□□□□ -1.91
NUP88-213ENST00000576862 CLDN23Q96B33 292 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms