RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 DCAF12Q5T6F0 453 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 SPATA31B1PQ5VZV4 182 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 MIC13Q5XKP0 118 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 C6orf15Q6UXA7 325 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-212ENST00000552491 VKORC1L1Q8N0U8 176 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 OR13A1Q8NGR1 328 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 OCC1Q8TAD7 63 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 MS4A10Q96PG2 267 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 MGST2Q99735 147 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 CHODLQ9H9P2 273 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 HES4Q9HCC6 221 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 YTHDF2Q9Y5A9 579 aaKnown RBP4.5□□□□□ -1.69
LIMA1-212ENST00000552491 HEATR1Q9H583 2144 aaKnown RBP4.5□□□□□ -1.69
LIMA1-212ENST00000552491 CADP27708 2225 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 NCOR1O75376 2440 aa4.5□□□□□ -1.69
LIMA1-212ENST00000552491 A0A1W2PNU3 283 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 A0A1W2PPV4 95 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 OOEPA6NGQ2 149 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 A6NNC1 897 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PRSS46E5RG02 174 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SLC17A3O00476 420 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 GABRA2P47869 451 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 RPL29P47914 159 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 LTC4SQ16873 150 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PRAMEF6Q5VXH4 476 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SLC35E4Q6ICL7 350 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 WDR31Q8NA23 367 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 NINJ1Q92982 152 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TAAR6Q96RI8 345 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TBX15Q96SF7 602 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PSG11Q9UQ72 335 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ICE1Q9Y2F5 2266 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 MDFIC2A0A1B0GVS7 189 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PCNX2A6NKB5 2137 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF705FA8MVS1 300 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 C9orf172C9J069 976 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 M0QZK8 103 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 MPDU1O75352 247 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 HPRT1P00492 218 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 IGHV3-13P01766 116 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 IGHV3-7P01780 117 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF705DP0CH99 300 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF705BP0CI00 300 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 STAG3L2P0CL84 134 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 STAG3L3P0CL85 134 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 KITLGP21583 273 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TIMP3P35625 211 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 COMPP49747 757 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 UBE2NP61088 152 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SELENOTP62341 195 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PAFAH1B2P68402 229 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 PLGLB1Q02325 96 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TBC1D28Q2M2D7 210 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TPTE2P1Q5T6R2 138 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ABHD17BQ5VST6 288 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 FBXW9Q5XUX1 488 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 C1orf229Q6ZS94 237 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ABHD12Q8N2K0 398 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZCCHC14Q8WYQ9 949 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 R3HDM4Q96D70 268 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SPRY4Q9C004 299 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 DEFB127Q9H1M4 99 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 MS4A5Q9H3V2 200 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TMEM106BQ9NUM4 274 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 FOXJ2Q9P0K8 574 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SPRR3Q9UBC9 169 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 KRTAP4-8A0A0G2JLE6 195 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 IQCF6A8MYZ5 107 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 C15orf65H3BRN8 121 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 FOXH1O75593 365 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 LYZL6O75951 148 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TDGF1P13385 188 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 IRF2P14316 349 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF25P17030 456 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 BTF3P20290 206 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 OPRK1P41145 380 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 VDAC2P45880 294 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 RPP30P78346 268 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 MRPL49Q13405 166 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 GABRA6Q16445 453 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF718Q3SXZ3 478 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 AARDQ4LEZ3 155 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 KRTCAP3Q53RY4 240 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 MRPL52Q86TS9 123 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 CMTM2Q8TAZ6 248 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 KLF14Q8TD94 323 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SSMEM1Q8WWF3 244 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 GMPPAQ96IJ6 420 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 TMEM68Q96MH6 324 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 HSD17B10Q99714 261 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 IER2Q9BTL4 223 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 GGTLC1Q9BX51 225 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 FAM234AQ9H0X4 552 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ZDHHC11Q9H8X9 412 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 SEPSECSQ9HD40 501 aaKnown RBP4.49□□□□□ -1.69
LIMA1-212ENST00000552491 FZR1Q9UM11 496 aa4.49□□□□□ -1.69
LIMA1-212ENST00000552491 ARFGEF3Q5TH69 2177 aa4.48□□□□□ -1.69
LIMA1-212ENST00000552491 DCHS1Q96JQ0 3298 aa4.48□□□□□ -1.69
LIMA1-212ENST00000552491 TRAV9-1A0A075B6T8 112 aa4.48□□□□□ -1.69
LIMA1-212ENST00000552491 A0A1B0GWJ7 208 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms