RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 PDLIM3Q53GG5 364 aaPredicted RBP10.67□□□□□ -0.7
SEC13-216ENST00000479868 OR4A47Q6IF82 309 aa10.67□□□□□ -0.7
SEC13-216ENST00000479868 C15orf54Q8N8G6 183 aa10.67□□□□□ -0.7
SEC13-216ENST00000479868 UNKLQ9H9P5 680 aaKnown RBP10.67□□□□□ -0.7
SEC13-216ENST00000479868 TNCP24821 2201 aa10.67□□□□□ -0.7
SEC13-216ENST00000479868 C15orf61A6NNL5 157 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 VSTM5A8MXK1 200 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 HMGB3O15347 200 aaKnown RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 IFNA10P01566 189 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 PAX6P26367 422 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 FLI1Q01543 452 aaPredicted RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 ZNF429Q86V71 674 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 TMEM170AQ8WVE7 144 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 DYNLRB1Q9NP97 96 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 HEYLQ9NQ87 328 aaPredicted RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 CISD1Q9NZ45 108 aaKnown RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 TCF19Q9Y242 345 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 A0A1W2PPE2 198 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 TNFRSF13BO14836 293 aaPredicted RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 PLAUP00749 431 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 CT45A6P0DMU7 189 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 CT45A5P0DMU8 189 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 CT45A7P0DMV0 189 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 GRNP28799 593 aaKnown RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 FFAR4Q5NUL3 377 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 AVPI1Q5T686 147 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 TMEM200BQ69YZ2 307 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 ABHD12Q8N2K0 398 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 Q8N7P7 452 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 LINC01560Q8TB33 94 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 HIST1H2BAQ96A08 127 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 ADTRPQ96IZ2 230 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 RBM14Q96PK6 669 aaKnown RBP10.66□□□□□ -0.7
SEC13-216ENST00000479868 SLC25A22Q9H936 323 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 SLC39A9Q9NUM3 307 aa10.66□□□□□ -0.7
SEC13-216ENST00000479868 ANKHD1Q8IWZ3 2542 aaKnown RBP10.65□□□□□ -0.7
SEC13-216ENST00000479868 LRBAP50851 2863 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 A0A1W2PPH5 198 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 IGKV1-16P04430 117 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 DEFA4P12838 97 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 CD1BP29016 333 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 MEF2CQ06413 473 aaPredicted RBP10.65□□□□□ -0.7
SEC13-216ENST00000479868 TMEM30BQ3MIR4 351 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 OR10G4Q8NGN3 311 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 LHX4Q969G2 390 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 RAB39BQ96DA2 213 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 ZNF714Q96N38 554 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 GAL3ST2Q9H3Q3 398 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 CTSZQ9UBR2 303 aa10.65□□□□□ -0.7
SEC13-216ENST00000479868 FAM90A27PA6NNH2 459 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 PRSS46E5RG02 174 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 MYOD1P15172 320 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 CA7P43166 264 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 HOXA1P49639 335 aaPredicted RBP10.65□□□□□ -0.71
SEC13-216ENST00000479868 UCNP55089 124 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 RAB11AP62491 216 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 H1FXQ92522 213 aaKnown RBP10.65□□□□□ -0.71
SEC13-216ENST00000479868 TMPRSS5Q9H3S3 457 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 TUBA4BQ9H853 241 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 TMEM14BQ9NUH8 114 aa10.65□□□□□ -0.71
SEC13-216ENST00000479868 TPRP12270 2363 aaKnown RBP10.64□□□□□ -0.71
SEC13-216ENST00000479868 LY86O95711 162 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 APOBEC3AP31941 199 aaPredicted RBP10.64□□□□□ -0.71
SEC13-216ENST00000479868 RPP30P78346 268 aaKnown RBP10.64□□□□□ -0.71
SEC13-216ENST00000479868 FAM90A2PQ658T7 463 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 HEPN1Q6WQI6 88 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 ZNF709Q8N972 641 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 CA5BP1Q8WTZ4 195 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 MS4A5Q9H3V2 200 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 FOXA2Q9Y261 457 aaPredicted RBP10.64□□□□□ -0.71
SEC13-216ENST00000479868 WDR83OSQ9Y284 106 aa10.64□□□□□ -0.71
SEC13-216ENST00000479868 SRRM4A7MD48 611 aaKnown RBP10.63□□□□□ -0.71
SEC13-216ENST00000479868 CD3EP07766 207 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 CASP6P55212 293 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 ZFP82Q8N141 532 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 OR13D1Q8NGV5 346 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 NIPSNAP3BQ9BS92 247 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 ABCA4P78363 2273 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 CTXND1A0A1B0GTU2 59 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 SMCO3A2RU48 225 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 DVL1O14640 695 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 NDUFB3O43676 98 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 HRASP01112 189 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 MBP02144 154 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 DLK1P80370 383 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 POU2AF1Q16633 256 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 TREML4Q6UXN2 200 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 FAM24BQ8N5W8 94 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 OR10A7Q8NGE5 316 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 C2CD4CQ8TF44 421 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 SLC35D1Q9NTN3 355 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 CHD8Q9HCK8 2581 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 DCHS2Q6V1P9 2916 aa10.63□□□□□ -0.71
SEC13-216ENST00000479868 C17orf112F2Z3M2 114 aa10.62□□□□□ -0.71
SEC13-216ENST00000479868 CCL21O00585 134 aa10.62□□□□□ -0.71
SEC13-216ENST00000479868 SIAH2O43255 324 aa10.62□□□□□ -0.71
SEC13-216ENST00000479868 RAB13P51153 203 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms