RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PARD6AQ9NPB6 346 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 TRBV6-1A0A0K0K1D8 114 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM189A5PLL7 270 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 FAM231BA6NCW3 169 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 J3KRW8 73 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 RER1O15258 196 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 XRCC2O43543 280 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 NUPR1O60356 82 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 CSN1S1P47710 185 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ERHP84090 104 aaKnown RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PMP22Q01453 160 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 C16orf47Q6ZP98 133 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF818PQ6ZRF7 136 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 LRRC29Q8WV35 223 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 COL25A1Q9BXS0 654 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ST3GAL6Q9Y274 331 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 GABRG2P18507 467 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 KLK9Q2XQG4 91 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ANKRD37Q7Z713 158 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 KLK9Q9UKQ9 250 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 OR2W1Q9Y3N9 320 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 H3BP45 60 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SP1P08047 785 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 TIMP3P35625 211 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ERVS71-1P61550 626 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 LSRQ86X29 649 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 OR1B1Q8NGR6 318 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 GALMQ96C23 342 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 NEIL1Q96FI4 390 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 OR4C12Q96R67 309 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 FAAP24Q9BTP7 215 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 FKBP11Q9NYL4 201 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 RNF114Q9Y508 228 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 FANCMQ8IYD8 2048 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1W2PRD5 423 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1W2PRF3 423 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1W2PRM7 423 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PMCHP20382 165 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 MEOX1P50221 254 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 DSCR4P56555 118 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 TCTAP57738 103 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 NXPH1P58417 271 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 LRRC10Q5BKY1 277 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SPINK14Q6IE38 97 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 UFSP1Q6NVU6 142 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SVIPQ8NHG7 77 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SLC35B1P78383 322 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PSG3Q16557 428 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM97Q5BJF2 176 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 DDB2Q92466 427 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PARLQ9H300 379 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 OSTCQ9NRP0 149 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 H0YJW9 148 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CA6P23280 308 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 OPRK1P41145 380 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM183BQ1AE95 376 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CT83Q5H943 113 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 MYPOPQ86VE0 399 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-220ENST00000471834 VPS25Q9BRG1 176 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV1-69-2A0A0G2JMI3 117 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF205O95201 554 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 FABP4P15090 132 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 GFRA1P56159 465 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 RAC3P60763 192 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 ACSM6Q6P461 480 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 Q6ZS52 159 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 C11orf42Q8N5U0 333 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 DYRK2Q92630 601 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 GNB1LQ9BYB4 327 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM38BQ9NVV0 291 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV2-26A0A0B4J1V2 119 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 WDR1O75083 606 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 NTF4P34130 210 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CDC34P49427 236 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-220ENST00000471834 RUNX1Q01196 453 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 OR1C1Q15619 314 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 NCR3LG1Q68D85 454 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 RNASEKQ6P5S7 137 aaKnown RBP4.47□□□□□ -1.69
SYNE1-220ENST00000471834 FAM90A1Q86YD7 464 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 OR8B3Q8NGG8 313 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 OR8B2Q96RD0 313 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 S1PR3Q99500 378 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CLDN18P56856 261 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CX3CL1P78423 397 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 HLA-DRB5Q30154 266 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 ETFRF1Q6IPR1 90 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 OR10P1Q8NGE3 313 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 KLF12Q9Y4X4 402 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 PCNX3Q9H6A9 2034 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 NPIPB6E9PJ23 425 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 NDUFS8O00217 210 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CXCL13O43927 109 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 CNN1P51911 297 aaKnown RBP4.47□□□□□ -1.69
SYNE1-220ENST00000471834 RTP5Q14D33 572 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM108Q6UXF1 575 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 C5orf30Q96GV9 206 aa4.47□□□□□ -1.69
SYNE1-220ENST00000471834 ALKBH3Q96Q83 286 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV5-51A0A0C4DH38 117 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF727A8MUV8 499 aa4.46□□□□□ -1.69
SYNE1-220ENST00000471834 SMIM17P0DL12 118 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms