RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TNFSF4P23510 183 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 PRRX1P54821 245 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 PRR27Q6MZM9 219 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 ASCL4Q6XD76 172 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 SLC35E3Q7Z769 313 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 KIR3DL3Q8N743 410 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 OR2T10Q8NGZ9 312 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 C10orf35Q96D05 121 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 FAM173AQ9BQD7 235 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 RTL8AQ9BWD3 113 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 SPRR3Q9UBC9 169 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 MALRD1Q5VYJ5 2156 aa7.24□□□□□ -1.25
USP40-203ENST00000427112 CA11O75493 328 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 LGALS4P56470 323 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 SUMO1P63165 101 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 HLA-DRB5Q30154 266 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 MRPL54Q6P161 138 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 TEX38Q6PEX7 206 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 LIN7CQ9NUP9 197 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 TNRC6AQ8NDV7 1962 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 IER3P46695 156 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 UCP2P55851 309 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 RPL19P84098 196 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 TBC1D28Q2M2D7 210 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 Q6P435 159 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 MRGPRGQ86SM5 289 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 DOLPP1Q86YN1 238 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 KLF14Q8TD94 323 aaPredicted RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 LRRC29Q8WV35 223 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 LRFN3Q9BTN0 628 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 SSBP3Q9BWW4 388 aaPredicted RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 SH2D2AQ9NP31 389 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 NAT8Q9UHE5 227 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 RBFOX2O43251 390 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP40-203ENST00000427112 CD24P25063 80 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 NPCDR1Q9BY65 106 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 ZDHHC11Q9H8X9 412 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 CISD1Q9NZ45 108 aaKnown RBP7.23□□□□□ -1.25
USP40-203ENST00000427112 TP73-AS1Q9UF72 201 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 ARL2-SNX15V9GYD0 113 aa7.23□□□□□ -1.25
USP40-203ENST00000427112 LNP1A1A4G5 178 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 MARCH11A6NNE9 402 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 J3QT63 122 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 SCGB2A1O75556 95 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 FKBP2P26885 142 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 IL3RAP26951 378 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 HOXC12P31275 282 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 GPR12P47775 334 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 GNB1P62873 340 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 ZNF90Q03938 601 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 NANOS1Q8WY41 292 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 MRPL37Q9BZE1 423 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 RYDENQ9NUL5 291 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 TRGV5A0A0B4J1U4 118 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 MLNRO43193 412 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 CER1O95813 267 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 BRWD1-AS2P59051 145 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 HTD2P86397 168 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 FAM19A2Q8N3H0 131 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 RPRMLQ8N4K4 120 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 OR4P4Q8NGL7 312 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 OR4A16Q8NH70 328 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 TMEM208Q9BTX3 173 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 PLSCR2Q9NRY7 297 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 AHRRA9YTQ3 701 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 CTXN2P0C2S0 81 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 COX5AP20674 150 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 IGHV1-2P23083 117 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 CHRNB4P30926 498 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 NUTF2P61970 127 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 SSPNQ14714 243 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 RIPPLY2Q5TAB7 128 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 TMEM164Q5U3C3 297 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 COQ2Q96H96 371 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 LINC00479Q96M42 142 aa7.22□□□□□ -1.25
USP40-203ENST00000427112 ACTR3CQ9C0K3 210 aaPredicted RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 SEPSECSQ9HD40 501 aaKnown RBP7.22□□□□□ -1.25
USP40-203ENST00000427112 TET2Q6N021 2002 aaPredicted RBP7.21□□□□□ -1.25
USP40-203ENST00000427112 LRRC30A6NM36 301 aa7.21□□□□□ -1.25
USP40-203ENST00000427112 CDKN1AP38936 164 aa7.21□□□□□ -1.25
USP40-203ENST00000427112 C19orf35Q6ZS72 473 aa7.21□□□□□ -1.25
USP40-203ENST00000427112 LYG1Q8N1E2 194 aa7.21□□□□□ -1.25
USP40-203ENST00000427112 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.21□□□□□ -1.25
USP40-203ENST00000427112 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.21□□□□□ -1.254e-8■■■■■ 40.1
USP40-203ENST00000427112 CREBBPQ92793 2442 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 MUC6Q6W4X9 2439 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 OR7C2O60412 319 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 ARR3P36575 388 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 RAB7AP51149 207 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 RELQ04864 619 aaPredicted RBP7.21□□□□□ -1.26
USP40-203ENST00000427112 COL5A1-AS1Q5SY13 56 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 FBXW9Q5XUX1 488 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 MOGAT3Q86VF5 341 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 OR1L6Q8NGR2 347 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 NEIL1Q96FI4 390 aaPredicted RBP7.21□□□□□ -1.26
USP40-203ENST00000427112 RNASE7Q9H1E1 156 aaKnown RBP7.21□□□□□ -1.26
USP40-203ENST00000427112 MS4A5Q9H3V2 200 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 ASCL3Q9NQ33 180 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 IL36GQ9NZH8 169 aa7.21□□□□□ -1.26
USP40-203ENST00000427112 PCSK5Q92824 1860 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms