RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 HIST1H2BDP58876 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BCP62807 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 SLC35B1P78383 322 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST2H2BEQ16778 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 BSXQ3C1V8 233 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.07□□□□□ -0.64
VPS54-203ENST00000409558 OR10W1Q8NGF6 305 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BHQ93079 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 ACY3Q96HD9 319 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BNQ99877 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BMQ99879 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 TRGV10A0A0A0MS01 117 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 C15orf62A8K5M9 175 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 SRRM5B3KS81 715 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 P2RY6Q15077 328 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 GFRALQ6UXV0 394 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 MRGPRGQ86SM5 289 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 HSD17B10Q99714 261 aaKnown RBP11.06□□□□□ -0.64
VPS54-203ENST00000409558 C15orf65H3BRN8 121 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 PLAUP00749 431 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 FAM87AP0C7U9 286 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 GZMHP20718 246 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 C10orf55Q5SWW7 151 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 OR5B12Q96R08 314 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 HES4Q9HCC6 221 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 A0A1W2PRD5 423 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 A0A1W2PRF3 423 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 A0A1W2PRM7 423 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 PPP1R2P9O14990 202 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 ARL14EPLP0DKL9 152 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 DIAPH2-AS1Q14236 149 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 ABHD5Q8WTS1 349 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 TOLLIPQ9H0E2 274 aa11.06□□□□□ -0.64
VPS54-203ENST00000409558 A0A1B0GUS0 222 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 FAM78BQ5VT40 261 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 RBMXL3Q8N7X1 1067 aaKnown RBP11.05□□□□□ -0.64
VPS54-203ENST00000409558 SGK494Q96LW2 274 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 TCF19Q9Y242 345 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 COL27A1Q8IZC6 1860 aaPredicted RBP11.05□□□□□ -0.64
VPS54-203ENST00000409558 DVL1O14640 695 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 FOXH1O75593 365 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 IGHV1-46P01743 117 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 SOD3P08294 240 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 OR4A8P0C604 315 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 SERF2P84101 59 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 RNF7Q9UBF6 113 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 LY6HO94772 140 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 C1QTNF9P0C862 333 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 GALR1P47211 349 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 C1orf185Q5T7R7 199 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 ZNF66Q6ZN08 573 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 SLC35E3Q7Z769 313 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 SDF2L1Q9HCN8 221 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 ZNF705GA8MUZ8 300 aaPredicted RBP11.05□□□□□ -0.64
VPS54-203ENST00000409558 KITLGP21583 273 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 CHRNB4P30926 498 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 OR4P4Q8NGL7 312 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 DYNLRB1Q9NP97 96 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 CISD1Q9NZ45 108 aaKnown RBP11.05□□□□□ -0.64
VPS54-203ENST00000409558 FUT9Q9Y231 359 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 PXMP4Q9Y6I8 212 aa11.05□□□□□ -0.64
VPS54-203ENST00000409558 DCHS2Q6V1P9 2916 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 CTXND1A0A1B0GTU2 59 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 CGAP01215 116 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 LMO1P25800 156 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 CD40P25942 277 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 C19orf35Q6ZS72 473 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 IFI27L2Q9H2X8 130 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 RPH3ALQ9UNE2 315 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 PRRG2O14669 202 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 RAB29O14966 203 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 LGALS4P56470 323 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 BSPH1Q075Z2 132 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 IFT22Q9H7X7 185 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 SEPSECSQ9HD40 501 aaKnown RBP11.04□□□□□ -0.64
VPS54-203ENST00000409558 TOX4O94842 621 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 ADH4P08319 380 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 CEACAM1P13688 526 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 IGFBP2P18065 325 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 B2MP61769 119 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 OR4A47Q6IF82 309 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 NHLRC2Q8NBF2 726 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 TUBA4BQ9H853 241 aa11.04□□□□□ -0.64
VPS54-203ENST00000409558 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.04□□□□□ -0.649e-7■■■■■ 28.9
VPS54-203ENST00000409558 TRGV8A0A0C4DH27 118 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 NPIPB11E5RHQ5 1161 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 OR7C2O60412 319 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 CA2P00918 260 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 ZNF114Q8NC26 417 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 LURAP1Q96LR2 239 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 GSN-AS1Q9NRJ2 163 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 C17orf112F2Z3M2 114 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 HPRT1P00492 218 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 GLRXP35754 106 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 RPL23P62829 140 aaKnown RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 RPL31P62899 125 aaKnown RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 ACOT6Q3I5F7 207 aaPredicted RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 POM121Q96HA1 1249 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 GAR1Q9NY12 217 aaKnown RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 FAM90A27PA6NNH2 459 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms