RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CD99P14209 185 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 SLC35B1P78383 322 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 OR10G8Q8NGN5 311 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 OR13A1Q8NGR1 328 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 Q8TCH9 128 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 RAB29O14966 203 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 IER3P46695 156 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 COMPP49747 757 aaPredicted RBP15.34■□□□□ 0.05
CCDC3-201ENST00000378825 CATR1Q13166 79 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 OR1C1Q15619 314 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 TMEM251Q8N6I4 163 aa15.34■□□□□ 0.05
CCDC3-201ENST00000378825 TMEM30CPA0ZSE6 113 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 RPLP1P05386 114 aaKnown RBP15.33■□□□□ 0.05
CCDC3-201ENST00000378825 CRISP2P16562 243 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 YPEL3P61236 119 aaPredicted RBP15.33■□□□□ 0.05
CCDC3-201ENST00000378825 KIAA1644Q3SXP7 199 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 C1orf159Q96HA4 380 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 SEPSECSQ9HD40 501 aaKnown RBP15.33■□□□□ 0.05
CCDC3-201ENST00000378825 FZR1Q9UM11 496 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 MRPS18CQ9Y3D5 142 aaKnown RBP15.33■□□□□ 0.05
CCDC3-201ENST00000378825 GOLT1BQ9Y3E0 138 aa15.33■□□□□ 0.05
CCDC3-201ENST00000378825 TNCP24821 2201 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 MPV17P39210 176 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 RPL31P62899 125 aaKnown RBP15.33■□□□□ 0.04
CCDC3-201ENST00000378825 FOXF2Q12947 444 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 SLC25A40Q8TBP6 338 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 NINJ1Q92982 152 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 R3HDM4Q96D70 268 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 RBM14Q96PK6 669 aaKnown RBP15.33■□□□□ 0.04
CCDC3-201ENST00000378825 POLDIP2Q9Y2S7 368 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 LAMA5O15230 3695 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 SVILO95425 2214 aa15.33■□□□□ 0.04
CCDC3-201ENST00000378825 ICE1Q9Y2F5 2266 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 SMPD2O60906 423 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 BRS3P32247 399 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 ZNF766Q5HY98 468 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 UTF1Q5T230 341 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 TEX43Q6ZNM6 134 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 CIB3Q96Q77 187 aaPredicted RBP15.32■□□□□ 0.04
CCDC3-201ENST00000378825 FAM173AQ9BQD7 235 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 LPAR2Q9HBW0 351 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 FCGR3BO75015 233 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 PRAMEF6Q5VXH4 476 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 BCL2L2Q92843 193 aaPredicted RBP15.32■□□□□ 0.04
CCDC3-201ENST00000378825 GGTLC1Q9BX51 225 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 FBXL7Q9UJT9 491 aa15.32■□□□□ 0.04
CCDC3-201ENST00000378825 TNFSF13O75888 250 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 UBE2NP61088 152 aaKnown RBP15.31■□□□□ 0.04
CCDC3-201ENST00000378825 PLGLB1Q02325 96 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 ARSJQ5FYB0 599 aaPredicted RBP15.31■□□□□ 0.04
CCDC3-201ENST00000378825 ATP1A1-AS1Q5TC04 95 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 BAGE3Q86Y29 109 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 BAGE2Q86Y30 109 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 OR1L6Q8NGR2 347 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 MIEN1Q9BRT3 115 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 COL27A1Q8IZC6 1860 aaPredicted RBP15.31■□□□□ 0.04
CCDC3-201ENST00000378825 FCN1O00602 326 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 SPRY4Q9C004 299 aa15.31■□□□□ 0.04
CCDC3-201ENST00000378825 STAG3L2P0CL84 134 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 STAG3L3P0CL85 134 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 TPPP2P59282 170 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 SELENOTP62341 195 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 EDDM3AQ14507 147 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 LRFN3Q9BTN0 628 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 OBP2BQ9NPH6 170 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 HEYLQ9NQ87 328 aaPredicted RBP15.3■□□□□ 0.04
CCDC3-201ENST00000378825 AHRRA9YTQ3 701 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 SNURFLB1AK76 121 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 PDLIM3Q53GG5 364 aaPredicted RBP15.3■□□□□ 0.04
CCDC3-201ENST00000378825 C11orf53Q8IXP5 236 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 Q8IYB0 196 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 ST6GALNAC3Q8NDV1 305 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 SAMD10Q9BYL1 202 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 CADP27708 2225 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 KRTDAPP60985 99 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 ZNF718Q3SXZ3 478 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 DHRS13Q6UX07 377 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 OR8I2Q8N0Y5 310 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 ZBTB34Q8NCN2 500 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 FAM122AQ96E09 287 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 VAMP8Q9BV40 100 aa15.3■□□□□ 0.04
CCDC3-201ENST00000378825 TTC28Q96AY4 2481 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 OOEPA6NGQ2 149 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 RPL39P5Q59GN2 51 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 OR5AU1Q8NGC0 362 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 RAB1CQ92928 201 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 C20orf144Q9BQM9 153 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 EP300Q09472 2414 aaPredicted RBP15.29■□□□□ 0.04
CCDC3-201ENST00000378825 LYZL6O75951 148 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 MYOD1P15172 320 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 PRAMEF5Q5TYX0 476 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 RCHY1Q96PM5 261 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 DEFB127Q9H1M4 99 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 GNB4Q9HAV0 340 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 IL36BQ9NZH7 164 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 B4GALT7Q9UBV7 327 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 ARFGEF3Q5TH69 2177 aa15.29■□□□□ 0.04
CCDC3-201ENST00000378825 ACTL6BO94805 426 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 TCL1AP56279 114 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 FXYD3Q14802 87 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms