RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 TMEM56-RWDD3S4R434 201 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 CLDN14O95500 239 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 IL18BPO95998 194 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 ARL14EPLP0DKL9 152 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PTGDSP41222 190 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 LIM2P55344 173 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 RPL31P62899 125 aaKnown RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 C2orf83Q53S99 150 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 HSD17B8Q92506 261 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PGPEP1Q9NXJ5 209 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PXMP4Q9Y6I8 212 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 OR2H2O95918 312 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 GJD4Q96KN9 370 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 TRAV5A0A0B4J249 113 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 IGHV1-24A0A0C4DH33 117 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PLPP3O14495 311 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 NGFP01138 241 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 SRSF2Q01130 221 aaKnown RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 ASCL2Q99929 193 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PAAF1Q9BRP4 392 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 SF3B5Q9BWJ5 86 aaKnown RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 NRXN2Q9P2S2 1712 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 ANKRD11Q6UB99 2663 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 LYL1P12980 280 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PNLIPP16233 465 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 DSCR4P56555 118 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 FAM27D1Q5T7N8 215 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 OTPQ5XKR4 325 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 TMEM179BQ7Z7N9 219 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 COA4Q9NYJ1 87 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 CACNG4Q9UBN1 327 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 ASPDHA6ND91 283 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 TNFRSF6BO95407 300 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 TWSG1Q9GZX9 223 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 ATP23Q9Y6H3 246 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 H3BUT2 72 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 SRSF1Q07955 248 aaKnown RBP eCLIP4.2□□□□□ -1.74
CSMD3-201ENST00000297405 RAX2Q96IS3 184 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 PDLIM7Q9NR12 457 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 NEUROG3Q9Y4Z2 214 aa4.2□□□□□ -1.74
CSMD3-201ENST00000297405 A6NCN8 305 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 RPL34P49207 117 aaKnown RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 WDR38Q5JTN6 314 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 MS4A4AQ96JQ5 239 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TRAV8-7A0A075B6U6 113 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 GAGE12HA6NDE8 117 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 COX5BP10606 129 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 PI3P19957 117 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 ZP4Q12836 540 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 CLDND2Q8NHS1 167 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 PIEZO2Q9H5I5 2752 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM72CH0Y354 149 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 DLL1O00548 723 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 CRXO43186 299 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM72AQ5TYM5 149 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM72DQ6L9T8 149 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM72BQ86X60 149 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 CYBAP13498 195 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 GDF1P27539 372 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 GNB1P62873 340 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 CCL20P78556 96 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SMAD4Q13485 552 aaKnown RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 CENPWQ5EE01 88 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FBXO46Q6PJ61 603 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SHISA6Q6ZSJ9 500 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 BCL6BQ8N143 479 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FGF21Q9NSA1 209 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TNFRSF18Q9Y5U5 241 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 NRG2O14511 850 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SNAI1O95863 264 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 PRSS8Q16651 343 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 GAGE2AQ6NT46 116 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 RPRMLQ8N4K4 120 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SVIPQ8NHG7 77 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 RNF208Q9H0X6 261 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TRBV5-4A0A0C4DH59 114 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 NAPSAO96009 420 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 MLF2Q15773 248 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TCTEX1D4Q5JR98 221 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM166AQ6J272 317 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 C8orf82Q6P1X6 216 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 ZNF645Q8N7E2 425 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 KLF13Q9Y2Y9 288 aaPredicted RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FAM231BA6NCW3 169 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 ASB10Q8WXI3 467 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 FLYWCH2Q96CP2 140 aaKnown RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 C14orf144Q96I85 54 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 KLHDC3Q9BQ90 382 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 IGKV6D-21A0A0A0MT36 114 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 H7C2G1 150 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SMAD2Q15796 467 aaKnown RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TAL2Q16559 108 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SPATA31B1PQ5VZV4 182 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.19□□□□□ -1.74
CSMD3-201ENST00000297405 LYRM9A8MSI8 78 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 SPINK4O60575 86 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 PSG6Q00889 435 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 RBPJLQ9UBG7 517 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 LINC01553A4QN01 128 aa4.19□□□□□ -1.74
CSMD3-201ENST00000297405 REG1AP05451 166 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms