RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZNRF1Q8ND25 227 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 GGTLC1Q9BX51 225 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 TRAV3A0A0B4J244 114 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 CXorf1O96002 111 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 GZMBP10144 247 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 ZNF134P52741 427 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 TMPRSS3P57727 454 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 LOXL3P58215 753 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 CR1LQ2VPA4 569 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 MIC13Q5XKP0 118 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 ABHD12Q8N2K0 398 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 C14orf144Q96I85 54 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 BTF3L4Q96K17 158 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 TXNDC17Q9BRA2 123 aa15.49■□□□□ 0.07
CPSF3-201ENST00000238112 F2RL2O00254 374 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 TNFSF13O75888 250 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 LRP11Q86VZ4 500 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 GCSAMQ8N6F7 178 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 OR4S2Q8NH73 311 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 MEGF10Q96KG7 1140 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 TCF19Q9Y242 345 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 PRR14LQ5THK1 2151 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 PTPRBP23467 1997 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 PRRC2CQ9Y520 2896 aaKnown RBP15.48■□□□□ 0.07
CPSF3-201ENST00000238112 PRSS46E5RG02 174 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 STAG3L2P0CL84 134 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 STAG3L3P0CL85 134 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 IL3RAP26951 378 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 STARD4Q96DR4 205 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 OR2V2Q96R30 315 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 CALYQ9NYX4 217 aa15.48■□□□□ 0.07
CPSF3-201ENST00000238112 A0A087X0M5 115 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 A0A1B0GX30 115 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 AHRRA9YTQ3 701 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 C1QTNF9P0C862 333 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 CFHR2P36980 270 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 IGFL2Q6UWQ7 119 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 SLC25A15Q9Y619 301 aa15.47■□□□□ 0.07
CPSF3-201ENST00000238112 TRGV8A0A0C4DH27 118 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 A0A0U1RQK1 487 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 MDFIC2A0A1B0GVS7 189 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 ZNF320A2RRD8 509 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 RAB7AP51149 207 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 MOGAT3Q86VF5 341 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 FAM169BQ8N8A8 192 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 SFRP2Q96HF1 295 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 IMMP2LQ96T52 175 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 NPVFQ9HCQ7 196 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 PGPEP1LA6NFU8 196 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 ZNF83P51522 516 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 CNN1P51911 297 aaKnown RBP15.46■□□□□ 0.07
CPSF3-201ENST00000238112 MSMPQ1L6U9 139 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 REC114Q7Z4M0 266 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 SSMEM1Q8WWF3 244 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 TMEM18Q96B42 140 aa15.46■□□□□ 0.07
CPSF3-201ENST00000238112 SLC31A2O15432 143 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 CGAP01215 116 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 GCGP01275 180 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 ZNF114Q8NC26 417 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 LEAP2Q969E1 77 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 TRAPPC1Q9Y5R8 145 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 C15orf61A6NNL5 157 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 DDB2Q92466 427 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 TMEM204Q9BSN7 226 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 RAB9BQ9NP90 201 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 ENY2Q9NPA8 101 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 DKK4Q9UBT3 224 aa15.45■□□□□ 0.06
CPSF3-201ENST00000238112 SCO2A0A1W2PP80 73 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 ZNF705GA8MUZ8 300 aaPredicted RBP15.44■□□□□ 0.06
CPSF3-201ENST00000238112 M0R1B8 84 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 FOXL1Q12952 345 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 TMEM144Q7Z5S9 345 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 LSM4Q9Y4Z0 139 aaKnown RBP15.44■□□□□ 0.06
CPSF3-201ENST00000238112 CACNA1GO43497 2377 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 HCFC1P51610 2035 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 SPRY3O43610 288 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 IL6RP08887 468 aaPredicted RBP15.44■□□□□ 0.06
CPSF3-201ENST00000238112 NPY1RP25929 384 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 KLF3P57682 345 aaPredicted RBP15.44■□□□□ 0.06
CPSF3-201ENST00000238112 SPRNQ5BIV9 151 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 TEPPQ6URK8 271 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 SLC24A4Q8NFF2 622 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 SGMS2Q8NHU3 365 aa15.44■□□□□ 0.06
CPSF3-201ENST00000238112 PCNX2A6NKB5 2137 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 RPL15P61313 204 aaKnown RBP15.43■□□□□ 0.06
CPSF3-201ENST00000238112 RAB31Q13636 194 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 PRSS8Q16651 343 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 VHLLQ6RSH7 139 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 MRPL41Q8IXM3 137 aaKnown RBP15.43■□□□□ 0.06
CPSF3-201ENST00000238112 TRBV20OR9-2A0A075B6H5 130 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 ITGB1BP1O14713 200 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 CCKARP32238 428 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 RHOBP62745 196 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 ARSJQ5FYB0 599 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-201ENST00000238112 OR4A47Q6IF82 309 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 UNQ6494/PRO21346Q6UXR6 183 aa15.43■□□□□ 0.06
CPSF3-201ENST00000238112 C1orf229Q6ZS94 237 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-201ENST00000238112 FOXA2Q9Y261 457 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-201ENST00000238112 SAA2-SAA4A0A096LPE2 208 aa15.42■□□□□ 0.06
CPSF3-201ENST00000238112 MKRN2OSH3BPM6 223 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms