RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PLXNB1O43157 2135 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 EYSQ5T1H1 3165 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CACNA1DQ01668 2161 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PIK3C2GO75747 1445 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 NOS1P29475 1434 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PTPRKQ15262 1439 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 YTHDC2Q9H6S0 1430 aaKnown RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 GRIN2BQ13224 1484 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 CCL15-CCL14A0A0B4J2E2 113 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 OR4C46A6NHA9 309 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 KNCNA6PVL3 124 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 AIPO00170 330 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GPR31O00270 319 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 BHLHE40O14503 412 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 POP7O75817 140 aaKnown RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 NDUFC2O95298 119 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 DHFRP00374 187 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 MT-CO2P00403 227 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 REG1AP05451 166 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PFN1P07737 140 aaKnown RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 CD28P10747 220 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 SCGB1A1P11684 91 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF708P17019 499 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 NTF3P20783 257 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 S100A2P29034 98 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GABRA3P34903 492 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 MAP2K4P45985 399 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GABRA4P48169 554 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GTF2A1P52655 376 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 CTBP2P56545 445 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 TMEM33P57088 247 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 HSPE1P61604 102 aaKnown RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 GNG3P63215 75 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PSG4Q00888 419 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GNA12Q03113 381 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 CCL15Q16663 113 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 TMEM241Q24JQ0 296 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 IAH1Q2TAA2 248 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 FAM201AQ5SY85 155 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZFAND6Q6FIF0 208 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 LPCAT3Q6P1A2 487 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF550Q7Z398 422 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GRINAQ7Z429 371 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PRNTQ86SH4 94 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 CROCCP2Q86T23 111 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 PHF13Q86YI8 300 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF101Q8IZC7 436 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 C1orf158Q8N1D5 194 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 SLC35F6Q8N357 371 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 TMEM86BQ8N661 226 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 DEFB125Q8N687 156 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ANKRD29Q8N6D5 301 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 LINC00337Q8N6G1 96 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF676Q8N7Q3 588 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZIC4Q8N9L1 334 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 OR4X1Q8NH49 305 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 FAM57AQ8TBR7 257 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 KLF14Q8TD94 323 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 CT55Q8WUE5 264 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ACOT12Q8WYK0 555 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 BORCS5Q969J3 196 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 SLC25A44Q96H78 314 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 ABHD14BQ96IU4 210 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF649Q9BS31 505 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GNB1LQ9BYB4 327 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF436Q9C0F3 470 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 CCDC90BQ9GZT6 254 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 GTSF1LQ9H1H1 148 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 INIPQ9NRY2 104 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 KCNIP2Q9NS61 270 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 SPANXCQ9NY87 97 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 SMPXQ9UHP9 88 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 RWDD2AQ9UIY3 292 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 VPREB3Q9UKI3 123 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 NDUFAF1Q9Y375 327 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 UFC1Q9Y3C8 167 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 OR51B4Q9Y5P0 310 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 ZNF706Q9Y5V0 76 aaPredicted RBP1.32□□□□□ -2.2
CD44-239ENST00000639002 PXMP4Q9Y6I8 212 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 NBEAL2Q6ZNJ1 2754 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 MYO9AB2RTY4 2548 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 THADAQ6YHU6 1953 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 TONSLQ96HA7 1378 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 KIF15Q9NS87 1388 aa1.32□□□□□ -2.2
CD44-239ENST00000639002 DYSFO75923 2080 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 MED14O60244 1454 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 BICRAQ9NZM4 1560 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 IGHV1-45A0A0A0MS14 117 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 IGHV1-69-2A0A0G2JMI3 117 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 hADV38S2A0JD32 116 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 ARL5CA6NH57 179 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 FAM159BA6NKW6 160 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 OR4C45A6NMZ5 311 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 E7EQ34 232 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 TMEM250H0YL14 139 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 C15orf65H3BRN8 121 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 J3QKU1 62 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 K7ERS5 55 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 SLC17A3O00476 420 aa1.31□□□□□ -2.2
CD44-239ENST00000639002 FAAHO00519 579 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms