RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FGF7P21781 194 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF787Q6DD87 383 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 TMEM147Q9BVK8 224 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 NDRG3Q9UGV2 375 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 C15orf62A8K5M9 175 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 HMGB3O15347 200 aaKnown RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 RBFOX2O43251 390 aaKnown RBP eCLIP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 FCN3O75636 299 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 SRP19P09132 144 aaKnown RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 TMEM41BQ5BJD5 291 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 DMRTC2Q8IXT2 367 aaPredicted RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 CYB561D1Q8N8Q1 229 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF383Q8NA42 475 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF439Q8NDP4 499 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 RNASE6Q93091 150 aaKnown RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PINX1Q96BK5 328 aaKnown RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 DYNLRB1Q9NP97 96 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 NGBQ9NPG2 151 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 SMCO4Q9NRQ5 59 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PPIAL4EA0A075B759 164 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 hADV38S2A0JD32 116 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PPIAL4DF5H284 164 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 TMEM178BH3BS89 294 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 IGKV1D-33P01593 117 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 IGKV1-33P01594 117 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PPIAL4FP0DN26 164 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 CCL3L1P16619 93 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 RPL31P62899 125 aaKnown RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 RELBQ01201 579 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 ACSM6Q6P461 480 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 OR4S2Q8NH73 311 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 LINC01560Q8TB33 94 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 FAM216AQ8WUB2 273 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 ISOC2Q96AB3 205 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PARD6GQ9BYG4 376 aaPredicted RBP13.42□□□□□ -0.26
COL4A1-204ENST00000543140 PPIAL4AQ9Y536 164 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 CHD8Q9HCK8 2581 aa13.42□□□□□ -0.26
COL4A1-204ENST00000543140 TNCP24821 2201 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 ABCA4P78363 2273 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 TRAV1-1A0A0B4J248 108 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 FAM90A27PA6NNH2 459 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 VSTM5A8MXK1 200 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 ITGB1BP1O14713 200 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 IFNA10P01566 189 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF506Q5JVG8 444 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 LYPD2Q6UXB3 125 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 RPP25LQ8N5L8 163 aaKnown RBP13.41□□□□□ -0.26
COL4A1-204ENST00000543140 RHOVQ96L33 236 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 SMDT1Q9H4I9 107 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 HEYLQ9NQ87 328 aaPredicted RBP13.41□□□□□ -0.26
COL4A1-204ENST00000543140 COL6A6A6NMZ7 2263 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 PLAUP00749 431 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 GRNP28799 593 aaKnown RBP13.41□□□□□ -0.26
COL4A1-204ENST00000543140 SPCS3P61009 180 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 ATP6V1FQ16864 119 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 NCMAPQ5T1S8 102 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 IQCF2Q8IXL9 164 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 H1FXQ92522 213 aaKnown RBP13.41□□□□□ -0.26
COL4A1-204ENST00000543140 CORO2AQ92828 525 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 TMEM106BQ9NUM4 274 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 MLXQ9UH92 298 aa13.41□□□□□ -0.26
COL4A1-204ENST00000543140 RPUSD1Q9UJJ7 312 aaKnown RBP13.41□□□□□ -0.26
COL4A1-204ENST00000543140 LRBAP50851 2863 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 COLCA2A8K830 154 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 KIR2DS2P43631 304 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 ZCCHC14Q8WYQ9 949 aaKnown RBP13.4□□□□□ -0.26
COL4A1-204ENST00000543140 HIPK2Q9H2X6 1198 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 NCOR2Q9Y618 2525 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 MAP1LC3B2A6NCE7 125 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 RRHO14718 337 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 RPL35P42766 123 aaKnown RBP13.4□□□□□ -0.26
COL4A1-204ENST00000543140 C1orf87Q8N0U7 546 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 ABHD12Q8N2K0 398 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 MBD3L1Q8WWY6 194 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 MAP1LC3BQ9GZQ8 125 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 LINC00574Q9H8X3 128 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 GAB2Q9UQC2 676 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 LINC00312Q9Y6C7 94 aa13.4□□□□□ -0.26
COL4A1-204ENST00000543140 ANKHD1Q8IWZ3 2542 aaKnown RBP13.39□□□□□ -0.27
COL4A1-204ENST00000543140 LOC102723971A0A1B0GUV8 181 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.39□□□□□ -0.27
COL4A1-204ENST00000543140 ARG1P05089 322 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 CRYBA1P05813 215 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 DEFA4P12838 97 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 THBS3P49746 956 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 CASP6P55212 293 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 GNB2P62879 340 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 OR4A47Q6IF82 309 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 SSX8Q7RTT4 187 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.39□□□□□ -0.27
COL4A1-204ENST00000543140 NPCDR1Q9BY65 106 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 SLC25A22Q9H936 323 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 FAM90A9PA6NNJ1 464 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 H3BQ15 152 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 HSPB1P04792 205 aaKnown RBP13.39□□□□□ -0.27
COL4A1-204ENST00000543140 MYOD1P15172 320 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 AARDQ4LEZ3 155 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 FFAR4Q5NUL3 377 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 TMEM200BQ69YZ2 307 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 SLC25A48Q6ZT89 311 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms