RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 VKORC1L1Q8N0U8 176 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 TCTEX1D1Q8N7M0 179 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 DMBX1Q8NFW5 382 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 NPBQ8NG41 125 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 RANBP3Q9H6Z4 567 aaPredicted RBP11.9□□□□□ -0.5
NUP54-213ENST00000513352 SRRM4A7MD48 611 aaKnown RBP11.89□□□□□ -0.51
NUP54-213ENST00000513352 IGLV2-23P01705 113 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 TCRBP04435 133 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 AMY1AP04745 511 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 OR5AC1P0C628 307 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 SAA1P0DJI8 122 aaPredicted RBP11.89□□□□□ -0.51
NUP54-213ENST00000513352 VSIG10L2P0DP72 767 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 VAMP1P23763 118 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 GNB1P62873 340 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 RELBQ01201 579 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 FAM71E2Q8N5Q1 922 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 OR4F5Q8NH21 305 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 OR2T6Q8NHC8 308 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 TMEM158Q8WZ71 300 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 TMEM230Q96A57 120 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 R3HDM4Q96D70 268 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 AIFM2Q9BRQ8 373 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 C20orf85Q9H1P6 137 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 PLEKHA2Q9HB19 425 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 TPSG1Q9NRR2 321 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 COMMD9Q9P000 198 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 KCNIP3Q9Y2W7 256 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 SIGLEC9Q9Y336 463 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 CUBNO60494 3623 aa11.89□□□□□ -0.51
NUP54-213ENST00000513352 ZFHX3Q15911 3703 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 TRAV6A0A075B6T7 132 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 HKR1P10072 659 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 ANXA3P12429 323 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 NQO2P16083 231 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 SLC6A1P30531 599 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 G6PCP35575 357 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 VDAC2P45880 294 aaPredicted RBP11.88□□□□□ -0.51
NUP54-213ENST00000513352 UBE2KP61086 200 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 ZNF585BQ52M93 769 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 LIN54Q6MZP7 749 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 Q6ZS46 218 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 RNASE11Q8TAA1 199 aaKnown RBP11.88□□□□□ -0.51
NUP54-213ENST00000513352 ABHD5Q8WTS1 349 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 RHOVQ96L33 236 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 C19orf24Q9BVV8 132 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 BEX1Q9HBH7 125 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 NUDT15Q9NV35 164 aa11.88□□□□□ -0.51
NUP54-213ENST00000513352 PLXNB1O43157 2135 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 B3GALNT1O75752 331 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 NDUFA7O95182 113 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 CA2P00918 260 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 KRASP01116 189 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 ANXA7P20073 488 aaKnown RBP11.87□□□□□ -0.51
NUP54-213ENST00000513352 AKR1C2P52895 323 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 DHODHQ02127 395 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 TMEM95Q3KNT9 176 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 TMEM128Q5BJH2 165 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 SLC35E3Q7Z769 313 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 TEX45Q8NA69 505 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 VSTM2AQ8TAG5 236 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 CASTOR1Q8WTX7 329 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 HSPB9Q9BQS6 159 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 FAM212BQ9NTI7 297 aaPredicted RBP11.87□□□□□ -0.51
NUP54-213ENST00000513352 PRR13Q9NZ81 148 aa11.87□□□□□ -0.51
NUP54-213ENST00000513352 MARCH11A6NNE9 402 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 CREBL2O60519 120 aaPredicted RBP11.86□□□□□ -0.51
NUP54-213ENST00000513352 TSPAN9O75954 239 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 ACTL6BO94805 426 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 OR2A4O95047 310 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 CNIH1O95406 144 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 HLA-DRB1P01911 266 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 MDKP21741 143 aaPredicted RBP11.86□□□□□ -0.51
NUP54-213ENST00000513352 UCP1P25874 307 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 RAB25P57735 213 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 PPP1R1AQ13522 171 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 C4orf46Q504U0 113 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 NRARPQ7Z6K4 114 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 SLC25A42Q86VD7 318 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 PPP1R27Q86WC6 154 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 ZNF695Q8IW36 515 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 OR2A7Q96R45 310 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 TMEM222Q9H0R3 208 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 PARP11Q9NR21 331 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 TMEM140Q9NV12 185 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 NUBP2Q9Y5Y2 271 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 ATRQ13535 2644 aa11.86□□□□□ -0.51
NUP54-213ENST00000513352 FCN1O00602 326 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 KCNAB3O43448 404 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 ATG12O94817 140 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 KBTBD11O94819 623 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 H2AFB2P0C5Z0 115 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 PJVKQ0ZLH3 352 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 FOXL1Q12952 345 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 DCTN2Q13561 401 aaKnown RBP11.85□□□□□ -0.51
NUP54-213ENST00000513352 TNXAQ16473 311 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 TMEM268Q5VZI3 342 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 OR4A47Q6IF82 309 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 H2BFWTQ7Z2G1 175 aa11.85□□□□□ -0.51
NUP54-213ENST00000513352 FOXRED2Q8IWF2 684 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms