RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C3orf85A0A1B0GTC6 90 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 RBP4P02753 201 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 IGKV1-13P0DP09 117 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 KRTDAPP60985 99 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 NIT1Q86X76 327 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 C1orf174Q8IYL3 243 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 TAF15Q92804 592 aaKnown RBP eCLIP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MEGF10Q96KG7 1140 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 ABHD14AQ9BUJ0 271 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 FGF21Q9NSA1 209 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 GOLT1BQ9Y3E0 138 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 FAM24AA6NFZ4 105 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 LMO7DNF2Z398 122 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 HOXB4P17483 251 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 GATA4P43694 442 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 HYAL1Q12794 435 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MRPL30Q8TCC3 161 aaKnown RBP4.5□□□□□ -1.69
SYNE1-220ENST00000471834 MANBALQ9NQG1 85 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 DOCK8Q8NF50 2099 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 KIAA1549Q9HCM3 1950 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 PDE4DIPQ5VU43 2346 aa4.5□□□□□ -1.69
SYNE1-220ENST00000471834 C2orf70A6NJV1 201 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 K7EQM0 130 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 APELAP0DMC3 54 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR10J1P30954 320 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 FUT6P51993 359 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 PPP1CAP62136 330 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF90Q03938 601 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 COX8CQ7Z4L0 72 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR5C1Q8NGR4 320 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SLC35E1Q96K37 410 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR51I2Q9H344 312 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SEPSECSQ9HD40 501 aaKnown RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 LIN7CQ9NUP9 197 aaKnown RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV3-43A0A0B4J1X8 118 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 MAP1LC3B2A6NCE7 125 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 METTL12A8MUP2 240 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ZNHIT1O43257 154 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR7C2O60412 319 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 RHBDL1O75783 438 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV3-43DP0DP04 118 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 FOXA3P55318 350 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SUMO1P63165 101 aaKnown RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 KLF5Q13887 457 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 C3AR1Q16581 482 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 LINC01600Q96MT4 127 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM204Q9BSN7 226 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 LRRC61Q9BV99 259 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 MAP1LC3BQ9GZQ8 125 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 CBY3A6NI87 242 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 BCL3P20749 454 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 VDAC2P45880 294 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 FFAR4Q5NUL3 377 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 Q6ZWC4 215 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR1L3Q8NH93 324 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 GAL3ST2Q9H3Q3 398 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF331Q9NQX6 463 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SMPXQ9UHP9 88 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM238LA0A1B0GVL6 79 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ADAM20O43506 726 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 CXorf66Q5JRM2 361 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR2T10Q8NGZ9 312 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 EXTL1Q92935 676 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SLC25A10Q9UBX3 287 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 TRGV10A0A0A0MS01 117 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1B0GXF2 115 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 M0R135 149 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 Q56UQ5 140 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 GUSBP11Q6P575 273 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR2AE1Q8NHA4 323 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 RDH5Q92781 318 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 GPR146Q96CH1 333 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SMIM12Q96EX1 92 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF799Q96GE5 643 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ATG2BQ96BY7 2078 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV1OR21-1A0A087WYE8 117 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 H7BYZ3 331 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF83P51522 516 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SUB1P53999 127 aaKnown RBP eCLIP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 OR10G3Q8NGC4 313 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 WFIKKN1Q96NZ8 548 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 CRLF2Q9HC73 371 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 TRAPPC1Q9Y5R8 145 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 SCN5AQ14524 2016 aa4.49□□□□□ -1.69
SYNE1-220ENST00000471834 TNRC6AQ8NDV7 1962 aaKnown RBP4.49□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV3OR15-7A0A075B7D8 119 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF320A2RRD8 509 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PSMB11A5LHX3 300 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF785A8K8V0 405 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 C17orf51A8MQB3 221 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PGLYRP1O75594 196 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 IGLV2-8P01709 118 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 CD55P08174 381 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 DYNLT3P51808 116 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 PRRX1P54821 245 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SP6Q3SY56 376 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 C6orf201Q7Z4U5 140 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 RPS19BP1Q86WX3 136 aaKnown RBP4.48□□□□□ -1.69
SYNE1-220ENST00000471834 POM121L2Q96KW2 1035 aa4.48□□□□□ -1.69
SYNE1-220ENST00000471834 SPRY4Q9C004 299 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms