RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-207ENST00000436724 CHODLQ9H9P2 273 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 PRELID3BQ9Y3B1 194 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 TMEM252Q8N6L7 170 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 TRBV23-1A0A0A0MS06 115 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 BORCS7-ASMTA0A0B4J1R7 106 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 SYNGR2O43760 224 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 CST7O76096 145 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 HPRT1P00492 218 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 IGHV1-8P0DP01 117 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 SPP1P10451 314 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 DVL1P1P54792 670 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-207ENST00000436724 WDR25Q64LD2 544 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-207ENST00000436724 OR8B3Q8NGG8 313 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 OR8B2Q96RD0 313 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 COA4Q9NYJ1 87 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 UBR5O95071 2799 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-207ENST00000436724 NEIL1Q96FI4 390 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-207ENST00000436724 MIOXQ9UGB7 285 aa17.25■□□□□ 0.35
PTPRF-207ENST00000436724 CT45A6P0DMU7 189 aa17.24■□□□□ 0.35
PTPRF-207ENST00000436724 CT45A5P0DMU8 189 aa17.24■□□□□ 0.35
PTPRF-207ENST00000436724 CT45A7P0DMV0 189 aa17.24■□□□□ 0.35
PTPRF-207ENST00000436724 FLI1Q01543 452 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-207ENST00000436724 SCRT1Q9BWW7 348 aa17.24■□□□□ 0.35
PTPRF-207ENST00000436724 VPS13CQ709C8 3753 aa17.24■□□□□ 0.35
PTPRF-207ENST00000436724 H7C2Y5 167 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 OR9G9P0C7N8 305 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 REG1BP48304 166 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 THBS3P49746 956 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 DIAPH2-AS1Q14236 149 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 TMEM217Q8N7C4 229 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 PPIAL4CA0A0B4J2A2 164 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 RBFOX2O43251 390 aaKnown RBP eCLIP17.23■□□□□ 0.351e-6■■■■□ 19.3
PTPRF-207ENST00000436724 RBMXL2O75526 392 aaKnown RBP17.23■□□□□ 0.35
PTPRF-207ENST00000436724 PPIAL4GP0DN37 164 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 TNFRSF9Q07011 255 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 CLINT1Q14677 625 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 SH3BGRL3Q9H299 93 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-207ENST00000436724 CACFD1Q9UGQ2 172 aa17.23■□□□□ 0.35
PTPRF-207ENST00000436724 C22orf46C9J442 243 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 J3QR06 171 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 MMP9P14780 707 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 SNCAP37840 140 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 FHITP49789 147 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 OR2B8PP59922 312 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 UBE2KP61086 200 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 SPINK9Q5DT21 86 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 OR10X1Q8NGY0 326 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 RAB40CQ96S21 281 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 TSPAN15O95858 294 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 TMEM267Q0VDI3 215 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-207ENST00000436724 ZNF833PQ6ZTB9 187 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 ABHD12Q8N2K0 398 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 OR4S2Q8NH73 311 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 RAB39BQ96DA2 213 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 RBKSQ9H477 322 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 HSPB7Q9UBY9 170 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 LRRK2Q5S007 2527 aa17.22■□□□□ 0.35
PTPRF-207ENST00000436724 TRAV3A0A0B4J244 114 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 IGKV1-16P04430 117 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 ZDHHC16Q969W1 377 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 MRPL20Q9BYC9 149 aaKnown RBP17.21■□□□□ 0.35
PTPRF-207ENST00000436724 SLC25A31Q9H0C2 315 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 WSB1Q9Y6I7 421 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 SVEP1Q4LDE5 3571 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 FAM208BQ5VWN6 2430 aa17.21■□□□□ 0.35
PTPRF-207ENST00000436724 GPR37O15354 613 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 KIR2DS2P43631 304 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 EFNA4P52798 201 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 RPL23AP62750 156 aaKnown RBP17.21■□□□□ 0.34
PTPRF-207ENST00000436724 GNB2P62879 340 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 HSD17B11Q8NBQ5 300 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 OR5C1Q8NGR4 320 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 TMEM133Q9H2Q1 129 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 PATZ1Q9HBE1 687 aaKnown RBP17.21■□□□□ 0.34
PTPRF-207ENST00000436724 PSENENQ9NZ42 101 aa17.21■□□□□ 0.34
PTPRF-207ENST00000436724 A0A087X0M5 115 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 A0A1B0GX30 115 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 TXNL1O43396 289 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 NQO2P16083 231 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 GPR6P46095 362 aaPredicted RBP17.2■□□□□ 0.34
PTPRF-207ENST00000436724 DYNLT3P51808 116 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 ADTRPQ96IZ2 230 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 QTRT1Q9BXR0 403 aaKnown RBP17.2■□□□□ 0.34
PTPRF-207ENST00000436724 MED13LQ71F56 2210 aa17.2■□□□□ 0.34
PTPRF-207ENST00000436724 FAM90A26D6RGX4 464 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 CAMLGP49069 296 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 SRSF1Q07955 248 aaKnown RBP eCLIP17.19■□□□□ 0.34
PTPRF-207ENST00000436724 ZNF525Q8N782 197 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 OR9G1Q8NH87 305 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 TMEM140Q9NV12 185 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 ERVK-16P61578 105 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 ZNF616Q08AN1 781 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 SPANXN5Q5MJ07 72 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 COMMD1Q8N668 190 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 ZNF596Q8TC21 504 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 RHOVQ96L33 236 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 SLC35D1Q9NTN3 355 aa17.19■□□□□ 0.34
PTPRF-207ENST00000436724 ONECUT1Q9UBC0 465 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms