RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 BRD3OSQ6XYD6 125 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 PDPNQ86YL7 162 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 LSM10Q969L4 123 aaKnown RBP16.03■□□□□ 0.16
CLN3-205ENST00000359984 R3HDM4Q96D70 268 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 ABCA1O95477 2261 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 FLNAP21333 2647 aaKnown RBP16.03■□□□□ 0.16
CLN3-205ENST00000359984 MYO9AB2RTY4 2548 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 RNASE11Q8TAA1 199 aaKnown RBP16.03■□□□□ 0.16
CLN3-205ENST00000359984 RRNAD1Q96FB5 475 aaKnown RBP16.03■□□□□ 0.16
CLN3-205ENST00000359984 MMP24Q9Y5R2 645 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 SVEP1Q4LDE5 3571 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 BAHCC1Q9P281 2608 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 MARCH11A6NNE9 402 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 HMSDA8MTL9 139 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 ATG12O94817 140 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 P0C879 139 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 RAB13P51153 203 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 CCDC144NLQ6NUI1 221 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 VKORC1L1Q8N0U8 176 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 CFHR4Q92496 578 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 GSKIPQ9P0R6 139 aa16.02■□□□□ 0.16
CLN3-205ENST00000359984 TEX15Q9BXT5 2789 aa16.02■□□□□ 0.15
CLN3-205ENST00000359984 ZNF469Q96JG9 3925 aaPredicted RBP16.01■□□□□ 0.15
CLN3-205ENST00000359984 SRRM4A7MD48 611 aaKnown RBP16.01■□□□□ 0.15
CLN3-205ENST00000359984 SNAPC5O75971 98 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 NQO2P16083 231 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 CXCL2P19875 107 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 HABP2Q14520 560 aaPredicted RBP16.01■□□□□ 0.15
CLN3-205ENST00000359984 TMEM177Q53S58 311 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 Q6ZRM9 215 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 FLYWCH2Q96CP2 140 aaKnown RBP16.01■□□□□ 0.15
CLN3-205ENST00000359984 NMES1Q9C002 83 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 CELSR1Q9NYQ6 3014 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 IL15RAQ13261 267 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 SSX9Q7RTT3 188 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 OR4C13Q8NGP0 309 aa16.01■□□□□ 0.15
CLN3-205ENST00000359984 OSR1Q8TAX0 266 aaPredicted RBP16.01■□□□□ 0.15
CLN3-205ENST00000359984 SHOXO15266 292 aa16■□□□□ 0.15
CLN3-205ENST00000359984 MPC2O95563 127 aa16■□□□□ 0.15
CLN3-205ENST00000359984 HRASP01112 189 aa16■□□□□ 0.15
CLN3-205ENST00000359984 CD1BP29016 333 aa16■□□□□ 0.15
CLN3-205ENST00000359984 ERVK-16P61578 105 aa16■□□□□ 0.15
CLN3-205ENST00000359984 TEX261Q6UWH6 196 aa16■□□□□ 0.15
CLN3-205ENST00000359984 H2BFWTQ7Z2G1 175 aa16■□□□□ 0.15
CLN3-205ENST00000359984 FAM219AQ8IW50 185 aa16■□□□□ 0.15
CLN3-205ENST00000359984 DMBX1Q8NFW5 382 aa16■□□□□ 0.15
CLN3-205ENST00000359984 RITA1Q96K30 269 aa16■□□□□ 0.15
CLN3-205ENST00000359984 RHOVQ96L33 236 aa16■□□□□ 0.15
CLN3-205ENST00000359984 SPIN2AQ99865 258 aa16■□□□□ 0.15
CLN3-205ENST00000359984 SPIN2BQ9BPZ2 258 aa16■□□□□ 0.15
CLN3-205ENST00000359984 U3KQ87 197 aa16■□□□□ 0.15
CLN3-205ENST00000359984 TRAV14DV4A0A0A6YYC5 116 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 A0A1B0GU03 582 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 TSC22D2O75157 780 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 VENTXO95231 258 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 RPS16P62249 146 aaKnown RBP15.99■□□□□ 0.15
CLN3-205ENST00000359984 CYCSP99999 105 aaKnown RBP15.99■□□□□ 0.15
CLN3-205ENST00000359984 KRTAP1-1Q07627 177 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 POU2AF1Q16633 256 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 HARBI1Q96MB7 349 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 MS4A7Q9GZW8 240 aaPredicted RBP15.99■□□□□ 0.15
CLN3-205ENST00000359984 CACNG5Q9UF02 275 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 SOX21Q9Y651 276 aaPredicted RBP15.99■□□□□ 0.15
CLN3-205ENST00000359984 A0A0U1RQK1 487 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 SLC25A6P12236 298 aa15.99■□□□□ 0.15
CLN3-205ENST00000359984 THOC7Q6I9Y2 204 aaKnown RBP15.99■□□□□ 0.15
CLN3-205ENST00000359984 CSPG4Q6UVK1 2322 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 FSHBP01225 129 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 CD24P25063 80 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 SMCO1Q147U7 214 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 ZNF680Q8NEM1 530 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 OR8H1Q8NGG4 311 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 OR4D5Q8NGN0 318 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 PPP1R1CQ8WVI7 109 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 TMEM140Q9NV12 185 aa15.98■□□□□ 0.15
CLN3-205ENST00000359984 OTOGQ6ZRI0 2925 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 PITX3O75364 302 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 OR9G9P0C7N8 305 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 OPCMLQ14982 345 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 LRRC37A5PQ49AS3 106 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 IGLV2-23P01705 113 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 HTR2BP41595 481 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 OR4A47Q6IF82 309 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 NANPQ8TBE9 248 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 AIFM2Q9BRQ8 373 aa15.97■□□□□ 0.15
CLN3-205ENST00000359984 FAM90A9PA6NNJ1 464 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 L7N2F9 121 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 CD5LO43866 347 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 IGKV1D-33P01593 117 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 IGKV1-33P01594 117 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 SNRNP70P08621 437 aaKnown RBP15.96■□□□□ 0.15
CLN3-205ENST00000359984 SAA1P0DJI8 122 aaPredicted RBP15.96■□□□□ 0.15
CLN3-205ENST00000359984 S100A1P23297 94 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 LGALS7P47929 136 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 FBLN7Q53RD9 439 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 CXorf66Q5JRM2 361 aaPredicted RBP15.96■□□□□ 0.15
CLN3-205ENST00000359984 OR1S1Q8NH92 325 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 NUP50Q9UKX7 468 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 NSG2Q9Y328 171 aa15.96■□□□□ 0.15
CLN3-205ENST00000359984 TRAV3A0A0B4J244 114 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms