RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NOTCH3Q9UM47 2321 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 PDCD11Q14690 1871 aaKnown RBP13.73□□□□□ -0.21
NPHP3-201ENST00000337331 UCP2P55851 309 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 PSG5Q15238 335 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 BPIFA4PQ86YQ2 179 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 SLC17A3O00476 420 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 CDKN1AP38936 164 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 FGF12P61328 243 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 FAM90A2PQ658T7 463 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 FAM166AQ6J272 317 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 SLC23A3Q6PIS1 610 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 RALGAPA1Q6GYQ0 2036 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 A0A1W2PN81 502 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 ODAMA1E959 279 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 PDE6DO43924 150 aa13.73□□□□□ -0.21
NPHP3-201ENST00000337331 PGPEP1LA6NFU8 196 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 FA2HQ7L5A8 372 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 MRPL52Q86TS9 123 aaKnown RBP13.72□□□□□ -0.21
NPHP3-201ENST00000337331 PEF1Q9UBV8 284 aaKnown RBP13.72□□□□□ -0.21
NPHP3-201ENST00000337331 SNAI2O43623 268 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 CEACAM21Q3KPI0 293 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 TDRG1Q3Y452 100 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 TAF15Q92804 592 aaKnown RBP eCLIP13.72□□□□□ -0.21
NPHP3-201ENST00000337331 VSIRQ9H7M9 311 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 PTPRDP23468 1912 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 C1QTNF9BB2RNN3 333 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 SP1P08047 785 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 KIR2DS2P43631 304 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 PMS2CLQ68D20 193 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 SFRP2Q96HF1 295 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 CDX2Q99626 313 aaPredicted RBP13.72□□□□□ -0.21
NPHP3-201ENST00000337331 AAMDCQ9H7C9 122 aa13.72□□□□□ -0.21
NPHP3-201ENST00000337331 FAM157AC9JC47 383 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 TGFBR3LH3BV60 316 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 ISLRO14498 428 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 APCSP02743 223 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 IL6RP08887 468 aaPredicted RBP13.71□□□□□ -0.21
NPHP3-201ENST00000337331 TTTY12Q9BZ98 90 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 IGKV1D-8A0A087WSZ0 117 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 TRAV30A0A087WSZ9 112 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 FOXC1Q12948 553 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 PET117Q6UWS5 81 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 ZBTB34Q8NCN2 500 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 TMEM167BQ9NRX6 74 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 CSN3P07498 182 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 C1QTNF9P0C862 333 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 PPOXP50336 477 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 C5orf24Q7Z6I8 188 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 DERL1Q9BUN8 251 aa13.71□□□□□ -0.21
NPHP3-201ENST00000337331 DOCK4Q8N1I0 1966 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 PLXNA1Q9UIW2 1896 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 LCTP09848 1927 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 PKDREJQ9NTG1 2253 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 A0A1W2PQM1 296 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 SSX8Q7RTT4 187 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 RTN4RQ9BZR6 473 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 ZNF71Q9NQZ8 489 aaPredicted RBP13.71□□□□□ -0.22
NPHP3-201ENST00000337331 ONECUT1Q9UBC0 465 aa13.71□□□□□ -0.22
NPHP3-201ENST00000337331 GAGE12BA1L429 117 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 SYNGR1O43759 233 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 S1PR2O95136 353 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 PFN1P07737 140 aaKnown RBP13.7□□□□□ -0.22
NPHP3-201ENST00000337331 NPY1RP25929 384 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 ACTL10Q5JWF8 245 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 INO80CQ6PI98 192 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-201ENST00000337331 Q8NFD4 153 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 VSTM2AQ8TAG5 236 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 LOC285556D6RIA3 1793 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 A6NDN8 102 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 PROB1E7EW31 1015 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 KHDC1LQ5JSQ8 128 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 BHLHA15Q7RTS1 189 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-201ENST00000337331 OR4F17Q8NGA8 305 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 TMEM171Q8WVE6 324 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 CADP27708 2225 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 ZNF785A8K8V0 405 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 C1orf174Q8IYL3 243 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 FNDC4Q9H6D8 234 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-201ENST00000337331 CDC42EP3Q9UKI2 254 aa13.7□□□□□ -0.22
NPHP3-201ENST00000337331 IGHV1-45A0A0A0MS14 117 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 A0A0A6YYD4 124 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 NHLH1Q02575 133 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 RSPO4Q2I0M5 234 aaPredicted RBP13.69□□□□□ -0.22
NPHP3-201ENST00000337331 WDFY1Q8IWB7 410 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 TRAV38-1A0A0B4J264 116 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 LCN12Q6JVE5 192 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 SELENOHQ8IZQ5 122 aaKnown RBP13.69□□□□□ -0.22
NPHP3-201ENST00000337331 VWCEQ96DN2 955 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 QTRT1Q9BXR0 403 aaKnown RBP13.69□□□□□ -0.22
NPHP3-201ENST00000337331 TIAF1O95411 115 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 MAS1LP35410 378 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 LHFPL1Q86WI0 220 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 LRRC75AQ8NAA5 344 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 OR8B3Q8NGG8 313 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 HEATR1Q9H583 2144 aaKnown RBP13.69□□□□□ -0.22
NPHP3-201ENST00000337331 A0A1W2PRD5 423 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 A0A1W2PRF3 423 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 A0A1W2PRM7 423 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 TNXAQ16473 311 aa13.69□□□□□ -0.22
NPHP3-201ENST00000337331 GATAD1Q8WUU5 269 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms