RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 UBE2CO00762 179 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 CCKARP32238 428 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 GCSAMLQ5JQS6 135 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 FAM216BQ8N7L0 139 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 TET2Q6N021 2002 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 MUC6Q6W4X9 2439 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 RAI1Q7Z5J4 1906 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 RRHO14718 337 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 IFNA1P01562 189 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 CGB3P0DN86 165 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 CGB7P0DN87 165 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 GNG10P50151 68 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 SELENOVP59797 346 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 ERVK-16P61578 105 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 GNB2P62879 340 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 CCL8P80075 99 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 RAB24Q969Q5 203 aa15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 HEYLQ9NQ87 328 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 YLPM1P49750 1951 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-201ENST00000291842 CTXND1A0A1B0GTU2 59 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 MEF2BQ02080 365 aaPredicted RBP15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 ABHD12Q8N2K0 398 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 RPUSD4Q96CM3 377 aaKnown RBP15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 P2RX4Q99571 388 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 SSX3Q99909 188 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 TMEM140Q9NV12 185 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 SAA2-SAA4A0A096LPE2 208 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 CYB5BO43169 146 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 SAA2P0DJI9 122 aaPredicted RBP15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 VWC2Q2TAL6 325 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 ABHD17AQ96GS6 310 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 SDF2L1Q9HCN8 221 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 APC2O95996 2303 aa15.14■□□□□ 0.01
SHKBP1-201ENST00000291842 KBTBD11-OT1A0A1B0GTJ5 212 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 MMP23AO75900 390 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 IGHV2-5P01817 119 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 CD1BP29016 333 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 GATA4P43694 442 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 RELBQ01201 579 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 NCMAPQ5T1S8 102 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 WDR25Q64LD2 544 aaPredicted RBP15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 TCF23Q7RTU1 214 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 SLC16A13Q7RTY0 426 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 WFDC8Q8IUA0 241 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 LYG1Q8N1E2 194 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 CISD2Q8N5K1 135 aaKnown RBP15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 ACTR3CQ9C0K3 210 aaPredicted RBP15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 GFOD1Q9NXC2 390 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 ZNRD1Q9P1U0 126 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 IL19Q9UHD0 177 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 DSCAML1Q8TD84 2053 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 A0A0G2JNJ9 132 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 SPCS3P61009 180 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 KIAA0141Q14154 515 aaPredicted RBP15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 KRTCAP3Q53RY4 240 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 STUMQ69YW2 141 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 GAFA1Q96PS6 74 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 SMIM7Q9BQ49 75 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 SIRT7Q9NRC8 400 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 Q9UFV3 132 aa15.13■□□□□ 0.01
SHKBP1-201ENST00000291842 DYSFO75923 2080 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 TRGV10A0A0A0MS01 117 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 TRAV38-1A0A0B4J264 116 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 MBP02144 154 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 MDKP21741 143 aaPredicted RBP15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 PSMB3P49720 205 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 C3orf36Q3SXR2 165 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 DOLPP1Q86YN1 238 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 Q8N7P7 452 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 FAM222BQ8WU58 562 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 METTL1Q9UBP6 276 aaKnown RBP15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 CUL9Q8IWT3 2517 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 AP4M1O00189 453 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 MYOD1P15172 320 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 OR4F5Q8NH21 305 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 DDB2Q92466 427 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 OR4F4Q96R69 305 aa15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 SEBOXQ9HB31 216 aaPredicted RBP15.12■□□□□ 0.01
SHKBP1-201ENST00000291842 CXorf65A6NEN9 183 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 ADIRFQ15847 76 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 C1QL4Q86Z23 238 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 SDSLQ96GA7 329 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 TP53TG5Q9Y2B4 290 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 B4DEV8 164 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 C17orf112F2Z3M2 114 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 MKRN2OSH3BPM6 223 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 PAGE4O60829 102 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 VDAC2P45880 294 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 NUBP1P53384 320 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 PNRC1Q12796 327 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 NANPQ8TBE9 248 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 TMEM170AQ8WVE7 144 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 RHOVQ96L33 236 aa15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 PATZ1Q9HBE1 687 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-201ENST00000291842 TANC2Q9HCD6 1990 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 RBFOX2O43251 390 aaKnown RBP eCLIP15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 GFRA3O60609 400 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 RAB7AP51149 207 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 MRPS11P82912 194 aaKnown RBP15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 AARDQ4LEZ3 155 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms